View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8458_low_9 (Length: 325)
Name: NF8458_low_9
Description: NF8458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8458_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 2354253 - 2354562
Alignment:
| Q |
1 |
actcattttccctcttgtggtcgtctttttcacaggtatttgtacagtctgatgtggttgaagtggcacttgacatgaaaaaccagtttgacgaagttga |
100 |
Q |
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| T |
2354253 |
actcattttccctcttgtggtcgtctttttcacaggtatttgtacagtctgatgtggttgaagtggcacttgacatgaaaaaccagtttgacgaagttga |
2354352 |
T |
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| Q |
101 |
tgcacttagtcacatagatgctttgaactctgatatattgtgtgacagtgaaggatggttattaagcaatcctatggggattaggacggagcgagagatt |
200 |
Q |
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| T |
2354353 |
tgcacttagtcacatagatgctttgaactctgatatattgtgtgacagtgaaggatggttattaagcaatcctatggggattaggacggagcgagagatt |
2354452 |
T |
|
| Q |
201 |
catgccgaatttgaaggaggaaaaatctatcgaagattgtacgagaagaagtagacatgaatgttttgtcacgcttgagtgcaatcctgtccattccaga |
300 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2354453 |
catgccgaatttgaaggaggaaaaatctatcgaaggttgtacgagaagaagtagacatgaatgttttgtcacgcttgagtgcaatcctgttcattccaga |
2354552 |
T |
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| Q |
301 |
cattttattg |
310 |
Q |
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|||||||||| |
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| T |
2354553 |
cattttattg |
2354562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 2362478 - 2362711
Alignment:
| Q |
18 |
tggtcgtctttttcacaggtatttgtacagtctgatgtggttgaagtggcacttgacatgaaaaaccagtttgacgaagttgatgcacttagtcacatag |
117 |
Q |
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||||||| ||| | |||||| |||||||| ||||||| | ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
2362478 |
tggtcgtgtttatgacaggtgtttgtacaatctgatgcactcgaagtggcacttgacatgaaaaaccagttaggtgaagttgatgcacttagtcacatag |
2362577 |
T |
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| Q |
118 |
atgctttgaactctgatatattgtgtgacagtgaaggatggttattaagcaatcctatggggattaggacggagcgagagattcatgccgaatttgaagg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||| ||||||||||||||||||||||||| |
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| T |
2362578 |
atgctttgaactctgatatattgtgtgacagtgaaggatggttattaagcaaccctatggggattcggactgagagagagattcatgccgaatttgaagg |
2362677 |
T |
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| Q |
218 |
aggaaaaatctatcgaagattgtacgagaagaag |
251 |
Q |
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|| |||||||||||||| ||||||||||||||| |
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| T |
2362678 |
agtgaaaatctatcgaaggttgtacgagaagaag |
2362711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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