View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8459_high_4 (Length: 481)
Name: NF8459_high_4
Description: NF8459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8459_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 470
Target Start/End: Complemental strand, 33716049 - 33715586
Alignment:
| Q |
19 |
acataatcaaccacatcaactaaaatctaaagggaaggtgtagttaattagttatacttcaaggttaagaaagattttctaaacaacctttttaatctaa |
118 |
Q |
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| T |
33716049 |
acataatcaaccacatcaacgaaaatctaaagggcaggtgtagttaattagttatacttcaaggttaagaaagattttctaaacaacctttttaatctaa |
33715950 |
T |
|
| Q |
119 |
aacaaatattattaaaatgctaaaagtgattttttggtttgaaatatagannnnnnnctcaaagaaattcccgaacaaacgaccccttgatttcatagct |
218 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33715949 |
aacaaatattattaaaatgataaaagtgattttttggtttgaaatgtagatttttttctcaaaaaaattcccgaacaaacgaccccttgatttcatagct |
33715850 |
T |
|
| Q |
219 |
agtccaaatgatttagttcatgggatacattggagc-ctaaatgcagtcaattctttaaattacattgagatattattaggttgaacacgttcattcaag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33715849 |
agtccaaatgatttagttcatgggatacattggagcgctaaatgcaatcaattctttaaattatattgagatattattaggttgaacacgttcattcaag |
33715750 |
T |
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| Q |
318 |
tttgattttgaaccttaaagttatgtgtatgattat----tatgtcggatgtgtccctttatttc-------nnnnnnnnnnnnngattgtgagaattaa |
406 |
Q |
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|||||||||| |||||| |||||||||||||||| | ||| ||||||||||| |||||| || ||| ||||||||||| |
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| T |
33715749 |
tttgattttggaccttacagttatgtgtatgattcttatatatatcggatgtgtctctttatctcaaaaaaaaaaaaaaaaaaaagatagtgagaattaa |
33715650 |
T |
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| Q |
407 |
tttatcggaaatgctactactagcgacaaaccgtaacgcgaatttatcacaacgccacaggttc |
470 |
Q |
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| T |
33715649 |
tttaacggaaatgctactactaacaacaaaccgtaacgcaaatttatcacaacgccgcaggttc |
33715586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 375
Target Start/End: Complemental strand, 33703730 - 33703369
Alignment:
| Q |
19 |
acataatcaaccacatcaactaaaatctaaagggaaggtgtagttaattagttatacttcaaggttaagaaagattttctaaacaacctttttaatctaa |
118 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33703730 |
acataatcaaccacatcaacgaaaatctaaagggcaggtgtagttaattagttatacttcaaggttaagaaagattttctaaacaacctttttaatctaa |
33703631 |
T |
|
| Q |
119 |
aacaaatattattaaaatgctaaaagtgattttttggtttgaaatatagannnnnnnctcaaagaaattcccgaacaaacgaccccttgatttcatagct |
218 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
33703630 |
aacaaatattattaaaatgataaaagtgattttttggtttgaaatgtagatttttttctcaaaaaaattcccaaacaaacgaccccttgatttcatagct |
33703531 |
T |
|
| Q |
219 |
agtccaaatgatttagttcatgggatacattggagc-ctaaatgcagtcaattctttaaattacattgagatattattaggttgaacacgttcattcaag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33703530 |
agtccaaatgatttagttcatgggatacattggagcgctaaatgcagtcaattctttaaattacattgagatattattaggttgaacacgttcattcaag |
33703431 |
T |
|
| Q |
318 |
tttgattttgaaccttaaagttatgtgtatgattat----tatgtcggatgtgtccctttat |
375 |
Q |
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|||||||||| |||||| |||||||||||||||| | ||| |||||||||||||||||| |
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| T |
33703430 |
tttgattttggaccttacagttatgtgtatgattcttatatatatcggatgtgtccctttat |
33703369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 428
Target Start/End: Complemental strand, 33703344 - 33703312
Alignment:
| Q |
396 |
gtgagaattaatttatcggaaatgctactacta |
428 |
Q |
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||||||||||||||| ||||||||||||||||| |
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| T |
33703344 |
gtgagaattaatttaacggaaatgctactacta |
33703312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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