View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8459_high_7 (Length: 238)

Name: NF8459_high_7
Description: NF8459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8459_high_7
NF8459_high_7
[»] chr6 (5 HSPs)
chr6 (1-222)||(30941419-30941640)
chr6 (1-216)||(30976876-30977091)
chr6 (1-216)||(30983315-30983530)
chr6 (1-216)||(30989479-30989694)
chr6 (4-222)||(31009200-31009421)


Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 30941419 - 30941640
Alignment:
Q  1 tttttccttcatcatcaacatctttctcttccttgcactcttcttaatcccaatacatatcactagtgacgttgaaagcttcaaatcttgtgcacctttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30941419 tttttccttcatcatcaacatctttctcttccttgcactcttcataatcccaatacatatcactagtgacgttgaaagcttcaaatcttgtgcacctttt 30941518  T
Q  101 agttgtggaaatttcatcaacattagttatccattttggagtgttaacaaccaaccaagttattgtggccacccaaacttcaaccttgattgtaaacatg 200  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30941519 agttgtggaaatttcaccaacgttagttatccattttggagtgttaacaaccaaccaagttattgtggccacccaaacttcaaccttgattgtgaacatg 30941618  T
Q  201 gcaacttgactattgagatcaa 222  Q
    ||||||||||||||||||||||    
T  30941619 gcaacttgactattgagatcaa 30941640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 30976876 - 30977091
Alignment:
Q  1 tttttccttcatcatcaacatctttctcttccttgcactcttcttaatcccaatacatatcactagtgacgttgaaagcttcaaatcttgtgcacctttt 100  Q
    ||||||||||||||||||||||| |||||| ||  ||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  30976876 tttttccttcatcatcaacatctgtctcttactctcactcttcttaattccaatacatgtcactagtgatgttgaaagcttcaaatcttgtgcacctttt 30976975  T
Q  101 agttgtggaaatttcatcaacattagttatccattttggagtgttaacaaccaaccaagttattgtggccacccaaacttcaaccttgattgtaaacatg 200  Q
    |||||||||||||||| ||| |||||||| |||||||||||| |||||||||||| || ||||||||| || ||||||||||| ||||||||| ||||||    
T  30976976 agttgtggaaatttcaccaatattagttacccattttggagtattaacaaccaacaaaattattgtggtcatccaaacttcaaacttgattgtgaacatg 30977075  T
Q  201 gcaacttgactattga 216  Q
    ||||||||||||||||    
T  30977076 gcaacttgactattga 30977091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 30983315 - 30983530
Alignment:
Q  1 tttttccttcatcatcaacatctttctcttccttgcactcttcttaatcccaatacatatcactagtgacgttgaaagcttcaaatcttgtgcacctttt 100  Q
    ||||||||||||||||||||||| |||||| ||  ||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  30983315 tttttccttcatcatcaacatctgtctcttactctcactcttcttaattccaatacatgtcactagtgatgttgaaagcttcaaatcttgtgcacctttt 30983414  T
Q  101 agttgtggaaatttcatcaacattagttatccattttggagtgttaacaaccaaccaagttattgtggccacccaaacttcaaccttgattgtaaacatg 200  Q
    |||||||||||||||| ||| |||||||| |||||||||||| |||||||||||| || ||||||||| || ||||||||||| ||||||||| ||||||    
T  30983415 agttgtggaaatttcaccaatattagttacccattttggagtattaacaaccaacaaaattattgtggtcatccaaacttcaaacttgattgtgaacatg 30983514  T
Q  201 gcaacttgactattga 216  Q
    ||||||||||||||||    
T  30983515 gcaacttgactattga 30983530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 30989479 - 30989694
Alignment:
Q  1 tttttccttcatcatcaacatctttctcttccttgcactcttcttaatcccaatacatatcactagtgacgttgaaagcttcaaatcttgtgcacctttt 100  Q
    ||||||||||||||||||||||| |||||| ||  ||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  30989479 tttttccttcatcatcaacatctgtctcttactctcactcttcttaattccaatacatgtcactagtgatgttgaaagcttcaaatcttgtgcacctttt 30989578  T
Q  101 agttgtggaaatttcatcaacattagttatccattttggagtgttaacaaccaaccaagttattgtggccacccaaacttcaaccttgattgtaaacatg 200  Q
    |||||||||||||||| ||| |||||||| |||||||||||| |||||||||||| || ||||||||| || ||||||||||| ||||||||| ||||||    
T  30989579 agttgtggaaatttcaccaatattagttacccattttggagtattaacaaccaacaaaattattgtggtcatccaaacttcaaacttgattgtgaacatg 30989678  T
Q  201 gcaacttgactattga 216  Q
    ||||||||||||||||    
T  30989679 gcaacttgactattga 30989694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 31009200 - 31009421
Alignment:
Q  4 ttccttcatcatcaacatctttctcttccttgcactctt---cttaatcccaatacatatcactagtgacgttgaaagcttcaaatcttgtgcacctttt 100  Q
    |||| |||||||||||||||||||||||||  |||||||   |||||||||||||||| ||| |||||||| |||||||| |||||||||||||||||||    
T  31009200 ttccatcatcatcaacatctttctcttcctctcactcttcttcttaatcccaatacatgtcaatagtgacggtgaaagctacaaatcttgtgcacctttt 31009299  T
Q  101 agttgtggaaatttcatcaacattagttatccattttggagtgttaacaaccaaccaagttattgtggccacccaaacttcaaccttgattgtaaacatg 200  Q
    || |||||| |||||| |||||||||||| |||||||||||| |||||||||| | || ||||||||| || |||||||||    |||||||| ||||||    
T  31009300 agatgtggagatttcaccaacattagttacccattttggagtattaacaaccatcaaaattattgtggtcatccaaacttcggagttgattgtgaacatg 31009399  T
Q  201 gcaacttgactattgagatcaa 222  Q
    |||||||||||||||| |||||    
T  31009400 gcaacttgactattgaaatcaa 31009421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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