View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8459_low_1 (Length: 896)
Name: NF8459_low_1
Description: NF8459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8459_low_1 |
 | |
|
| [»] scaffold0627 (4 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 817; Significance: 0; HSPs: 29)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 817; E-Value: 0
Query Start/End: Original strand, 16 - 880
Target Start/End: Complemental strand, 8644951 - 8644087
Alignment:
| Q |
16 |
agtttggtgttgtgaattcttgcaatggcttgctttgtttgcgtcatccatttgaaggaagaccattagtaatttgcaatccagtcactggggagtttat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8644951 |
agtttggtgttgtgaattcttgcaatggcttgctttgtttgcgtcatccatttgaaggaagaccattagtaatttgcaatccagtcactggggagtttat |
8644852 |
T |
|
| Q |
116 |
aagacttcctaaagctactgcgactcttatccacaatgacatagtggataaggtatcaggtattgctggttttggcttccaacctaaaactaatgaatat |
215 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8644851 |
aagacttcctaaagctactgcgaatcttatccacaatgacatagtggataaggtatcaggtattgctgcttttggcttccaacctaaaactaatgaatat |
8644752 |
T |
|
| Q |
216 |
aaggtgatgtatatttgggacagatatgttagacgaggcaatggctgggtgtttgatcatattgtccttgagataaacacacttggaacatcatcatgga |
315 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8644751 |
aaggtgatgtatatttgggacaaatatgttagacgaggcaatggctgggtgtttgatcatattgtccttgagataaacacacttggaacaccatcatgga |
8644652 |
T |
|
| Q |
316 |
gaaatgctgaagtagatcctcaaatttctattggatcaggtttgaatcttcattatcccacttatgttaatggtgcgcttcattggatcagatttgagga |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8644651 |
gaaatgctgaagtagatcctcaaatttctattggatcaggtttgagtcttcattatcccacttatgttaatggtgcgcttcattggatcagatttgagga |
8644552 |
T |
|
| Q |
416 |
tgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcctccagtgtttcaaaatcaaaataatggatttcgtcgt |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8644551 |
tgaagaaaggtctatattgtgtttctgttttgaaagtgagaggttgcaatcatttccttctcctccagtgtttcaaaatcaaaataatggatttcgtcgt |
8644452 |
T |
|
| Q |
516 |
aacgagcgtattcgcatgggagaattaaggggattactttacatttgcgatacatattcttttcgtgatgttgcaatgtgggttatgaatgaatatggca |
615 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8644451 |
aacgagcgtattcgcatgggagaattaaggggattactttacatttgcgatacatattcttttcgtgatgttgcaatgtgggttatgaatgaatatgaca |
8644352 |
T |
|
| Q |
616 |
ttggagaatcatggactaaggtttacaagattgatactttggtcagtcctttgggcagacctgattcgcagcgttatggtttatgttggccggtaaaaca |
715 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
8644351 |
ttggagaatcatggactaaggtttacaacattgatactttgatcagtcctttgggcagacctgattcgcagcgttatggtttatgttggccggtaaaaaa |
8644252 |
T |
|
| Q |
716 |
ctttgaagagggggctgccatattgttatatcattcctgcaattgtcttatctactatgaacccgagaaacatgctttcaaagtttttcgaattcacggc |
815 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8644251 |
ctttgaagagggggctgccatattgttatatcattcctgcaattgtcttatctactatgaacccaagaaacatgctttcaaagtttttcgaattcacggc |
8644152 |
T |
|
| Q |
816 |
acttcttccgaatttgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgt |
880 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8644151 |
atttcttccgaatttgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgt |
8644087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 182 - 877
Target Start/End: Complemental strand, 8637440 - 8636745
Alignment:
| Q |
182 |
tggttttggcttccaacctaaaactaatgaatataaggtgatgtatatttgggacagatatgttagacgaggcaatggctgggtgtttgatcatattgtc |
281 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| || |||| ||| |||||| |||||||||| | ||||||||||||| ||| ||| |
|
|
| T |
8637440 |
tggttttggtttccaacctaaaactaatgaatataaggtgataagaatatggggcagtgatgttaaacgaggcaatcgttgggtgtttgatcgtatggtc |
8637341 |
T |
|
| Q |
282 |
cttgagataaacacacttggaacatcatcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgaatcttcattatcccacttatg |
381 |
Q |
| |
|
||||||||| | |||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||| | | |||| ||||||||||| || |
|
|
| T |
8637340 |
cttgagatatatacacttggaacaccatcatggagaaatgctgaagtggatccccaaatttctattggatcaaatatatggcttcgttatcccacttgtg |
8637241 |
T |
|
| Q |
382 |
ttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcctcc |
481 |
Q |
| |
|
| |||||| || ||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8637240 |
tgaatggtacgattcattggatcagatttaagggtcaagaaaggtctatattgtgtttctgtttagaaaatgagaggttgcaatcatttccttctcctcc |
8637141 |
T |
|
| Q |
482 |
agtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcgatacatattcttttcgt |
581 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||| ||||| ||||||| || ||| ||| |
|
|
| T |
8637140 |
agtgttacaaaatcaaaataatggatttcgtcataacgagtgtattcgcattggagaattaaggggattactttatatttgtgatacatcttttttccgt |
8637041 |
T |
|
| Q |
582 |
gatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactttggtcagtcctttgggcagacctgatt |
681 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
8637040 |
gatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaacatcgatactttggtcagtcctttgggcagacctgatt |
8636941 |
T |
|
| Q |
682 |
cgcagcgttatggtttatgttggccggtaaaacactttgaagagggggctgccatattgttatatcattcctgcaattgtcttatctactatgaacccga |
781 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8636940 |
cgcagcgttatggtatatgatggccggtaaaacactttgaagagggggctgccatattgttatatcattcctgcaattgtcttatctactatgaacccga |
8636841 |
T |
|
| Q |
782 |
gaaacatgctttcaaagtttttcgaattcacggcacttcttccgaatttgttgaaataattccacatgttccaagtctaatctcattgaaggatgt |
877 |
Q |
| |
|
||||| || ||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8636840 |
gaaacttggtttcaaagtttttagaattcaaggcacttcttccgagtttgttgaaataattccacatgttccaagtctaatctcattgaaggatgt |
8636745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 266 - 880
Target Start/End: Complemental strand, 8678304 - 8677680
Alignment:
| Q |
266 |
gtttgatcatattgtccttgagataaacacacttggaa-catcatcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgaatct |
364 |
Q |
| |
|
|||||||| ||| ||||||||||||||||| |||||| || |||||||||||||||||||||| ||||||||||||||||||||||||| ||||| || |
|
|
| T |
8678304 |
gtttgatcgtatgatccttgagataaacacaattggaaacaccatcatggagaaatgctgaagtggatcctcaaatttctattggatcagatttgaggct |
8678205 |
T |
|
| Q |
365 |
tcattatcccacttatgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaa |
464 |
Q |
| |
|
| ||||||||||| | ||||||||||||||||||||||| ||||||||| | |||||| |||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
8678204 |
ccgttatcccacttgtattaatggtgcgcttcattggatcggatttgagggtcaagaaatgtctatattgtgtttctgtttagaaactgagaagttgcaa |
8678105 |
T |
|
| Q |
465 |
tcatttccttctcctccagtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcg |
564 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||||||| ||||| ||||||||| ||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
8678104 |
tcatttccttctcctccagtatttcaaaatcataataatggatttcgttgtaacaagcgtattcacatgggaaaattaagaggattactttacatttgcg |
8678005 |
T |
|
| Q |
565 |
atacatattcttttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactttg-------- |
656 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| | || |
|
|
| T |
8678004 |
atacatatcctttccgtgatgttgcaatgtgggatatgaatgaatatggcattggagaatcatggactaaggtttacaacattgatattgtggtccgtcc |
8677905 |
T |
|
| Q |
657 |
-gtcagtcctttgggcagacctgattcgcagcgttatggtttatgttggccggtaaaacactttgaagagggggctgccatattgttatatcattcctgc |
755 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8677904 |
tgtcagtcctttgggcagacctgattcgcggcattatggtttatgttggccggtaaaacactttgaagagggtgctgccatattgttatatcattcctgc |
8677805 |
T |
|
| Q |
756 |
aattgtcttatctactatgaacccgagaaacatgctttcaaagtttttcgaattcacggcacttcttccgaatttgttgaaataattccacatgttccaa |
855 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8677804 |
aattgtcttatctactatgaacccgagaaacatggtttcaaagtttttcgaattcacggcacttcttccgaatttgttgaaataattccacatgttccaa |
8677705 |
T |
|
| Q |
856 |
gtctaatctcattgaaggatgttgt |
880 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
8677704 |
gtctaatctcattgaaggatgttgt |
8677680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 180 - 878
Target Start/End: Complemental strand, 8536070 - 8535378
Alignment:
| Q |
180 |
gctggttttggcttccaacctaaaactaatgaatataaggtgatgtatatttgggacagatatgttagacgaggcaatggctgggtgtttgatcatattg |
279 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| | || |||| ||| |||||| ||| | ||||| |||| |||||| | | | |
|
|
| T |
8536070 |
gctggttttggtttccaacctaaaactaatgaatataaggtgataaacatgtgggtgagacatgttaaacgtgccaatgtgtgggagtttgagcgtttga |
8535971 |
T |
|
| Q |
280 |
tccttgagataaacacacttggaacatcatcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgaatcttcattatcccactta |
379 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||| |||||| ||||||||||||||| || | || ||| | |||||||||| |
|
|
| T |
8535970 |
cccttgagataaacacacttggaaccccatcctggagaaatgttgaagtggatcctcaaatttctttt---------tcgagtctaaagtatcccacttg |
8535880 |
T |
|
| Q |
380 |
tgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcct |
479 |
Q |
| |
|
||| |||||||| || |||||| | |||||||| | | ||||||| |||||| |||||| || |||||||||| | || | ||||||||||||||| |
|
|
| T |
8535879 |
tgtgaatggtgcactacattggctaagatttgatggtctgcaaaggtcaatattgattttctgctttgaaagtgagacgctgaagtcatttccttctcct |
8535780 |
T |
|
| Q |
480 |
ccag---tgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcgatac-atattct |
575 |
Q |
| |
|
||| ||||| |||||| ||||||||||||| | |||| | |||| ||||||||||||||| |||||| ||||||||||| ||| | | || | |
|
|
| T |
8535779 |
ccacagatgtttggaaatcataataatggatttcttagtaatagacatattagcatgggagaattaaagggatttctttacatttgtgattcgacctttt |
8535680 |
T |
|
| Q |
576 |
tttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactttggtcagtcctttgggcagac |
675 |
Q |
| |
|
| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||| ||||| || || | |
|
|
| T |
8535679 |
tatc-tgatgtttcaatgtgggttatgaatgaatatggcattggagaatcatggactaagatttacaacattgatacttcattcaatccttcggaaagtc |
8535581 |
T |
|
| Q |
676 |
ctgattcgcagcgttatggtttatgttggccggtaaaacactttgaagagggggctgccatattgttatatcattcctgcaattgtcttatctactatga |
775 |
Q |
| |
|
|| | | | | | ||||||||| | ||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8535580 |
gtgttccacggagatatggtttaagctggccaataaaacactttgaagaaggtgctgccatattgttatatcattcctgcaattgttttatctactatga |
8535481 |
T |
|
| Q |
776 |
acccgagaaacatgctttcaaagtttttcgaattcacggcacttcttccgaatttgttgaaataattccacatgttccaagtctaatctcattgaaggat |
875 |
Q |
| |
|
||| |||||| ||| ||| |||||||||||||| |||| | | ||| | ||| ||||| |||| ||||| ||||||||||||| |||||||||||| |
|
|
| T |
8535480 |
acctgagaaatatggattcgaagtttttcgaatttacgggagtagttcaaatttttttgaagtaatcccacacattccaagtctaatttcattgaaggat |
8535381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 180 - 811
Target Start/End: Complemental strand, 8529506 - 8528890
Alignment:
| Q |
180 |
gctggttttggcttccaacctaaaactaatgaatataaggtgatgtatatttgggacagatatgttagacgaggcaatggctgggtgtttgatcatattg |
279 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| || | ||| ||| |||||| || | |||| ||||||||||| | | | |
|
|
| T |
8529506 |
gctggttttggattccaacctaaaactaatgaatataaggtaataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtga |
8529407 |
T |
|
| Q |
280 |
tccttgagataaacacacttggaacatcatcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgaatcttcattatcccactta |
379 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||| |||||| ||||||||||||||| || | || ||| | |||||||||| |
|
|
| T |
8529406 |
tccttgagataaacacacttggaacaacatcctggagaaatgttgaagtggatcctcaaatttctttt---------tcgagtctaaagtatcccacttg |
8529316 |
T |
|
| Q |
380 |
tgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcct |
479 |
Q |
| |
|
||| |||||||| ||||||||||| |||||||||| | | ||||||| |||||| |||||| || |||| |||||||||||| || |||||||||||| |
|
|
| T |
8529315 |
tgtgaatggtgcacttcattggataagatttgagggtcagcaaaggtcaatattggttttctgctttgaaaatgagaggttgcagtcgtttccttctcct |
8529216 |
T |
|
| Q |
480 |
cca---gtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcgatac-atattct |
575 |
Q |
| |
|
||| |||||| |||||| ||||| ||| || ||| || |||| ||||||||||||||| |||||| || |||||||| ||| | | || |
|
|
| T |
8529215 |
ccacatgtgtttggaaatca---taatgttttttgttgtag---gcctattagcatgggagaattaaagggatttctatacatttgtgatccgaccttta |
8529122 |
T |
|
| Q |
576 |
tttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactttggtcagtcctttgggcagac |
675 |
Q |
| |
|
| || | ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||| | ||| |||||||| | |
|
|
| T |
8529121 |
tatc-taatgtttcaatgtgggttatgaatgaatatggcattggagaatcatggactaagatttacaacatcgatacttcgttcaatcctttggatcg-- |
8529025 |
T |
|
| Q |
676 |
ctgattcgcagcgttatggtttatgttggccggtaaaacactttgaagagggggctgccatattgttatatcattcctgcaattgtcttatctactatga |
775 |
Q |
| |
|
|| | | | | ||||||||||| | |||||| |||||||||||||||| || ||||||||||||| ||||||||||| ||||||| ||| |||||| || |
|
|
| T |
8529024 |
-tgttccacggggttatggtttaagctggccgataaaacactttgaagaaggtgctgccatattgtcatatcattcctccaattgttttacctactacga |
8528926 |
T |
|
| Q |
776 |
acccgagaaacatgctttcaaagtttttcgaattca |
811 |
Q |
| |
|
||| || ||| ||| |||||||||||||||||||| |
|
|
| T |
8528925 |
acctgaaaaatatgggttcaaagtttttcgaattca |
8528890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 280 - 877
Target Start/End: Original strand, 9074363 - 9074948
Alignment:
| Q |
280 |
tccttgagataaacacacttggaacatcatcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgaatcttcattatcccactta |
379 |
Q |
| |
|
||||| |||||||||||||||||||| || || |||||||| |||||| ||||||||||||||| || |||| ||| | |||||||||| |
|
|
| T |
9074363 |
tccttcagataaacacacttggaacaacaatattgagaaatgttgaagtggatcctcaaatttctttt---------ttgagtctcgagtatcccacttg |
9074453 |
T |
|
| Q |
380 |
tgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcct |
479 |
Q |
| |
|
||| |||||||| ||||||||||| |||| ||| || | ||||||| ||||||| ||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
9074454 |
tgtgaatggtgcacttcattggataagatatgaaaatcagcaaaggtcaatattgtttttctgttttgaaagtgagaggttgcagtcatttccttctcct |
9074553 |
T |
|
| Q |
480 |
cca---gtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcga-tacatattct |
575 |
Q |
| |
|
|| |||||| ||| || |||| |||| || | |||| | ||| |||||||||||||| |||||| ||||||||||| || | | ||| | |
|
|
| T |
9074554 |
ccgcatgtgtttggaaaccataatagtggaattgttgataacagacatat---catgggagaattaaagggatttctttacatttgtgactggacatttt |
9074650 |
T |
|
| Q |
576 |
tttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactttggtcagtcctttgggcagac |
675 |
Q |
| |
|
| || ||||||| || |||||||||||||||||||||| |||| ||||||||||||||| |||||||| |||||||||| | ||| ||||| |||| | | |
|
|
| T |
9074651 |
tatc-tgatgtttcagtgtgggttatgaatgaatatggtattgaagaatcatggactaaagtttacaacattgatacttcgttcaatccttcgggctgtc |
9074749 |
T |
|
| Q |
676 |
ctgattcgcagcgttatggtttatgttggccggtaaaacactttgaagagggggctgccatattgttatatcattcctgcaattgtcttatctactatga |
775 |
Q |
| |
|
| | | | ||| |||||||| |||| |||||||||||||||| || |||||||||||||||||||||| || ||||||| |||||| |||||| |
|
|
| T |
9074750 |
ttattacatggggttcaggtttatg---gccgataaaacactttgaagaaggtgctgccatattgttatatcattgctacaattgttttatcttctatga |
9074846 |
T |
|
| Q |
776 |
acccgagaaacatgctttcaaagtttttcgaattcacggcacttcttccgaatttgttgaaataattccacatgttccaagtctaatctcattgaaggat |
875 |
Q |
| |
|
||| |||||| ||| |||||||||||||||||||| || | | ||| | ||| ||||| |||| |||||| ||||||||||||| |||||||||||| |
|
|
| T |
9074847 |
acctgagaaatatggattcaaagtttttcgaattcatgggagtcattcaaagttttttgaagtaatcccacatattccaagtctaatttcattgaaggat |
9074946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 254 - 877
Target Start/End: Complemental strand, 8641875 - 8641252
Alignment:
| Q |
254 |
caatggctgggtgtttgatcatattgtccttgagataaacacacttggaacatcatcatggagaaatgctgaagtagatcctcaaatttctattggatca |
353 |
Q |
| |
|
|||||||| ||||||||| | | | ||||||||||||||||||||||| || ||||||||||||||| |||||| |||||||| ||||||||| |
|
|
| T |
8641875 |
caatggctaggtgtttgagcgtgtgatccttgagataaacacacttggagcaccatcatggagaaatgttgaagtggatcctcagatttctatt------ |
8641782 |
T |
|
| Q |
354 |
ggtttgaatcttcattatcccacttatgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtg |
453 |
Q |
| |
|
| || |||| | |||||||||| ||| ||| ||| |||||||| |||| |||||||| || ||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
8641781 |
---tcgagtcttaagtatcccacttgtgtgaatagtgttcttcattgaatcaaatttgagggggagcaaaggtcaatattatgtttctgtttggaaagtg |
8641685 |
T |
|
| Q |
454 |
agaggttgcaatcatttccttctcctcca---gtgtttcaaaatcaaaataat---ggatttcgtcgtaacgagcgtattcgcatgggagaattaagggg |
547 |
Q |
| |
|
|||| ||| | | |||||||||||||||| |||||| |||||| |||||| ||| ||| | ||||| || |||| |||||||||| |||| ||| |
|
|
| T |
8641684 |
agagattgaagttatttccttctcctccacatgtgtttggaaatcataataataatggaattcatggtaacaggcttattagcatgggagagttaaaggg |
8641585 |
T |
|
| Q |
548 |
attactttacatttgcgatacatattc-----ttttcgt-gatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttac |
641 |
Q |
| |
|
||| | ||||||||| ||| | || ||||| | ||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8641584 |
atttccttacatttgtgatcgtgactcgacctttttctttgatgtcacagtgtgggttatgaatgaatatggcattggagaatcatggactaaggcttac |
8641485 |
T |
|
| Q |
642 |
aagattgata---ctttggtcagtcctttgggcagacctgat---tcgcagcgttatggtttatgttggccggtaaaacactttgaagagggggctgcca |
735 |
Q |
| |
|
|| ||||||| ||| |||| | |||||||| |||| | | | |||||||| ||||||||||||||| |||||||||||| || ||||| |
|
|
| T |
8641484 |
aacattgataatacttcagtcaattctttgggctatcctggtctcttttggggttatggtgtatgttggccggtaatacactttgaagatggtgctgcgt |
8641385 |
T |
|
| Q |
736 |
tattgttatatcattcctgcaattgtcttatctactatgaacccgagaaacatgctttcaaagtttttcgaattcacggcacttcttccgaatttgttga |
835 |
Q |
| |
|
||| |||||||||||||||||||||| |||||||||||||||||| || | ||||||||| |||||| || |||| ||| ||| ||||| |
|
|
| T |
8641384 |
tatggttatatcattcctgcaattgt-ttatctactatgaacccggga--------tgcaaagttttcaaaattcatgggacttgttcagaaagagttga |
8641294 |
T |
|
| Q |
836 |
aataattccacatgttccaagtctaatctcattgaaggatgt |
877 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8641293 |
agtaattccacatattccaagtctaatctcattgaaggatgt |
8641252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 180 - 644
Target Start/End: Original strand, 1599837 - 1600293
Alignment:
| Q |
180 |
gctggttttggcttccaacctaaaactaatgaatataaggtgatgtatatttgggacagatatgttagacgaggcaatggctgggtgtttgatcatattg |
279 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||| | || ||| |||||||||| ||| | ||||| | || |||| | | | |
|
|
| T |
1599837 |
gctgcttttggtttccaacctaaaactaatgaatataaggtgataaacatgagggtgagatatgttaaacgtgccaatgcgttggagtttaagattgtga |
1599936 |
T |
|
| Q |
280 |
tccttgagataaacacacttggaacatcatcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgaatcttcattatcccactta |
379 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||| |||||| ||||||||||||||| || | || ||| | ||||||||| |
|
|
| T |
1599937 |
tccttgagataaacacacttggaacaccatcctggagaaatgttgaagtggatcctcaaatttctttttg---------gatgcttaagaatcccacttg |
1600027 |
T |
|
| Q |
380 |
tgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcct |
479 |
Q |
| |
|
||| |||||||| ||||||||||| |||| ||||| ||| ||| ||| |||||| ||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
1600028 |
tgtgaatggtgcacttcattggataagatatgagggtgagcaaatgtcaatattggttttctgttttgaaagtgagaggttgcagtcatttccttctcct |
1600127 |
T |
|
| Q |
480 |
cca---gtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcga-tacatattct |
575 |
Q |
| |
|
||| | |||| |||||| ||||||||| | || ||||| | | || ||||||||||||||| |||||| ||||||||||| || ||| || | |
|
|
| T |
1600128 |
ccacatgagtttggaaatcataataatggaacttgtggtaacagccatgttagcatgggagaattaaagggatttctttacatttgtgactac--ctttt |
1600225 |
T |
|
| Q |
576 |
tttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaag |
644 |
Q |
| |
|
| || ||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1600226 |
tatc-tgatgttccaatgtgggttatgaaggaatatggcattgaagaatcatggactaaggtttacaag |
1600293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 180 - 654
Target Start/End: Original strand, 2856424 - 2856895
Alignment:
| Q |
180 |
gctggttttggcttccaacctaaaactaatgaatataaggtgatgtatatttgggacagatatgttagacgaggcaatggctgggtgtttgatcatattg |
279 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||| || ||| ||| |||||||||||||| |||| | | ||||||||| | | | | |
|
|
| T |
2856424 |
gctggttttggtttccaacccaaaactaatgaatataaggtgatcataatgtggaacaaatatgttagacgagacaatcgtttggtgtttgagcgtgtag |
2856523 |
T |
|
| Q |
280 |
tccttgagataaacacacttggaacatcatcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgaatcttcattatcccactta |
379 |
Q |
| |
|
| || |||||| |||| || |||||||||||||||||||||| |||||| ||||||||||||||| | |||||| ||| |||| || | |
|
|
| T |
2856524 |
tgctcgagatacacacgctcggaacatcatcatggagaaatgttgaagtggatcctcaaatttcttt---------tttgaagcttttgaatccaacatg |
2856614 |
T |
|
| Q |
380 |
tgttaatggtgcgcttcattggatcagatttgaggat---gaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatttccttct |
476 |
Q |
| |
|
||| ||||| || ||||||||||| | |||||| | | || ||| ||| |||||||||||| ||| ||||||||||||||||| || ||||||||| |
|
|
| T |
2856615 |
tgtgaatggcgcacttcattggattatatttgaagcttggcaacaaaagtcaatattgtgtttcaattttgaaagtgagaggttgcagtcgtttccttct |
2856714 |
T |
|
| Q |
477 |
cctcca---gtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcgatacatatt |
573 |
Q |
| |
|
|||||| |||||| |||||| |||||||||||| | || | || |||| | |||||||||| | |||||| ||||||||||| ||| || | |
|
|
| T |
2856715 |
cctccacatgtgtttggaaatcatgataatggatttccccatagcatgcctattagattgggagaattgaagggatttctttacatttgtcatagatcgt |
2856814 |
T |
|
| Q |
574 |
cttttcgtg-atgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactt |
654 |
Q |
| |
|
| | ||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
2856815 |
c-tctcgagaatgttacaatgtgggttatgaatgaatatggcattggagaatcatggactattgtttacaacattgatactt |
2856895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 180 - 654
Target Start/End: Original strand, 2874034 - 2874505
Alignment:
| Q |
180 |
gctggttttggcttccaacctaaaactaatgaatataaggtgatgtatatttgggacagatatgttagacgaggcaatggctgggtgtttgatcatattg |
279 |
Q |
| |
|
||||||||| | |||||||| ||||||||||||||||||||||| || ||| ||| |||||||||||||| |||| | | ||||||||| | | | | |
|
|
| T |
2874034 |
gctggttttagtttccaacccaaaactaatgaatataaggtgatcataatatggaacaaatatgttagacgagacaatcgtttggtgtttgagcgtgtag |
2874133 |
T |
|
| Q |
280 |
tccttgagataaacacacttggaacatcatcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgaatcttcattatcccactta |
379 |
Q |
| |
|
| || |||||| |||| || |||||| ||||||||||||||| |||||| ||||||||||||||| | |||||| ||| |||| || | |
|
|
| T |
2874134 |
tgctcgagatacacacgctcggaacaccatcatggagaaatgttgaagtggatcctcaaatttcttt---------tttgaagcttttgaatccaacatg |
2874224 |
T |
|
| Q |
380 |
tgttaatggtgcgcttcattggatcagatttgaggat---gaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatttccttct |
476 |
Q |
| |
|
||| ||||| || ||||||||||| | |||||| | | || ||| ||| |||||||||||| ||| ||||||||||||||||| || ||||||||| |
|
|
| T |
2874225 |
tgtgaatggcgcacttcattggattatatttgaagcttggcaacaaaagtcaatattgtgtttcaattttgaaagtgagaggttgcagtcgtttccttct |
2874324 |
T |
|
| Q |
477 |
cctcca---gtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcgatacatatt |
573 |
Q |
| |
|
|||||| |||||| |||||| |||||||||||| | || | || |||| | |||||||||| | |||||| ||||||||||| ||| || | |
|
|
| T |
2874325 |
cctccacatgtgtttggaaatcatgataatggatttccccatagcatgcctattagattgggagaattgaagggatttctttacatttgtcatagatcgt |
2874424 |
T |
|
| Q |
574 |
cttttcgtg-atgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactt |
654 |
Q |
| |
|
| | ||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
2874425 |
c-tctcgagaatgttacaatgtgggttatgaatgaatatggcattggagaatcatggactattgtttacaacattgatactt |
2874505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 180 - 654
Target Start/End: Original strand, 2844597 - 2845068
Alignment:
| Q |
180 |
gctggttttggcttccaacctaaaactaatgaatataaggtgatgtatatttgggacagatatgttagacgaggcaatggctgggtgtttgatcatattg |
279 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||| || ||| ||| ||||||||||||| |||| | | ||||||||| | | | | |
|
|
| T |
2844597 |
gctggttttggtttccaacccaaaactaatgaatataaggtgatcataatgtggaacaaatatgttagacgaaacaatcgtttggtgtttgagcgtgtag |
2844696 |
T |
|
| Q |
280 |
tccttgagataaacacacttggaacatcatcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgaatcttcattatcccactta |
379 |
Q |
| |
|
| || |||||| |||| ||||||||| ||||||||||||| | |||||| ||||||||||||||| | |||||| ||| |||| || | |
|
|
| T |
2844697 |
tgctcgagatacacacgcttggaacaccatcatggagaaaggttgaagtggatcctcaaatttcttt---------tttgaagcttttgaatccaacatg |
2844787 |
T |
|
| Q |
380 |
tgttaatggtgcgcttcattggatcagatttga---ggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatttccttct |
476 |
Q |
| |
|
||| ||||| || ||||||||||| | |||||| || || ||| ||| |||||||||||| ||| ||||||||||||||||| || ||||||||| |
|
|
| T |
2844788 |
tgtgaatggcgcacttcattggattatatttgaaacggggcaacaaaagtcaatattgtgtttcaattttgaaagtgagaggttgcagtcgtttccttct |
2844887 |
T |
|
| Q |
477 |
cctcca---gtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcgatacatatt |
573 |
Q |
| |
|
|||||| |||||| |||||| |||||||||||| | || | || |||| | |||||||||| | |||||| ||||||||||| ||| || | |
|
|
| T |
2844888 |
cctccacatgtgtttggaaatcatgataatggatttccccttagcatgcctattagattgggagaattgaagggatttctttacatttgtcatatatcgt |
2844987 |
T |
|
| Q |
574 |
cttttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactt |
654 |
Q |
| |
|
|| || ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
2844988 |
ctcttgagaatgttacaatgtgggttatgaatgaatatggcattggagaatcatggactattgtttacagcattgatactt |
2845068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 530 - 874
Target Start/End: Complemental strand, 9003685 - 9003351
Alignment:
| Q |
530 |
catgggagaattaaggggattactttacatttgcgatacatattcttttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatgg |
629 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| || ||| ||| | ||||||||||| ||||||||||| || ||||| || ||| |
|
|
| T |
9003685 |
catgggagaattaaggggatttctttacatttgtgactcatcctctctctttgatgttgcaacttgggttatgaaggagtatgg----------tcttgg |
9003596 |
T |
|
| Q |
630 |
actaaggtttacaagattgatactttggtcagtcctttgggcagacctgattcgcagcgttatggtttatgttggccggtaaaacactttgaagaggggg |
729 |
Q |
| |
|
||||||||||||| |||||||||| | | |||||||||||| |||||| | | | | |||||| |||||||||||||||| ||||||||| | | |
|
|
| T |
9003595 |
actaaggtttacagcattgatacttccgccggtcctttgggcatacctgaatatccgtctagtggtttttgttggccggtaaaactgtttgaagagagtg |
9003496 |
T |
|
| Q |
730 |
ctgccatattgttatatcattcctgcaattgtcttatctactatgaacccgagaaacatgctttcaaagtttttcgaattcacggcacttcttccgaatt |
829 |
Q |
| |
|
|| ||||||||| ||| | || | ||||||| | |||||||||||||||||||||||| |||| |||||||| | ||||||| || || |||| |
|
|
| T |
9003495 |
cttgcatattgttttatgaatcgtacaattgtttagtctactatgaacccgagaaacatggattcagagtttttcaagttcacggggctcaatcaaaatt |
9003396 |
T |
|
| Q |
830 |
tgttgaaataattccacatgttccaagtctaatctcattgaagga |
874 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9003395 |
agttgaagtaattccacatattccaagtctaatctcattgaagga |
9003351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 686 - 877
Target Start/End: Original strand, 8548128 - 8548319
Alignment:
| Q |
686 |
gcgttatggtttatgttggccggtaaaacactttgaagagggggctgccatattgttatatcattcctgcaattgtcttatctactatgaacccgagaaa |
785 |
Q |
| |
|
|||| ||| ||| |||| |||||||||||||||||||||||| |||||| |||||||||||||||| | ||||| ||| |||||| | ||||| ||| |
|
|
| T |
8548128 |
gcgtcatgctttgtgtttgccggtaaaacactttgaagagggtgctgccgtattgttatatcattcattggattgttttacttactataaccccgataaa |
8548227 |
T |
|
| Q |
786 |
catgctttcaaagtttttcgaattcacggcacttcttccgaatttgttgaaataattccacatgttccaagtctaatctcattgaaggatgt |
877 |
Q |
| |
|
||| |||||| |||||||||||| ||| ||||||| ||| ||||| |||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
8548228 |
tatggagtcaaagattttcgaattcatggctcttcttcacaatcatttgaagtaattcaacatattccaagtctaatctcattgaaggatgt |
8548319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 589 - 654
Target Start/End: Original strand, 2904938 - 2905003
Alignment:
| Q |
589 |
caatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactt |
654 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
2904938 |
caatgtgggttatgaatgaatatggcattggagaatcatggactaagatttacaacattgatactt |
2905003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 180 - 482
Target Start/End: Original strand, 2904540 - 2904836
Alignment:
| Q |
180 |
gctggttttggcttccaacctaaaactaatgaatataaggtgatgtatatttgggacagatatgttagacgaggcaatggctgggtgtttgatcatattg |
279 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||| || ||| | | | |||||||||| | ||| | | |||||| || | | | | |
|
|
| T |
2904540 |
gctggttttggtttccaacccaaaactaatgaatataaggtgataataatgtggaataaacatgttagacgggccaacgatttggtgttcgagcgtctag |
2904639 |
T |
|
| Q |
280 |
tccttgagataaacacacttggaacatcatcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgaatcttcattatcccactta |
379 |
Q |
| |
|
| ||||||||| |||| || |||||| |||||||||||||| |||||| ||||||||||||||| || ||||| ||| ||||||| | |
|
|
| T |
2904640 |
tgcttgagatacacacgctcggaacaacatcatggagaaatcttgaagtggatcctcaaatttctttt---------ttgaagcttttgaatcccacatg |
2904730 |
T |
|
| Q |
380 |
tgttaatggtgcgcttcattggatcagatttgaggatg---aagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatttccttct |
476 |
Q |
| |
|
||| ||||| | | |||||||||| | |||| |||| || ||| ||| |||||||||||| |||| |||||||||||| ||||||||||||||||| |
|
|
| T |
2904731 |
tgtgaatggcggattacattggatcatagttgaagatggtcaacaaaagtcaatattgtgtttcagttttgaaagtgagaggatgcaatcatttccttct |
2904830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 369 - 479
Target Start/End: Original strand, 8547823 - 8547933
Alignment:
| Q |
369 |
tatcccacttatgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcat |
468 |
Q |
| |
|
|||||||||| ||| ||| |||| |||||||||||| ||||| |||| | | |||||||||||||||| ||||| ||||| |||||||| ||||||| |
|
|
| T |
8547823 |
tatcccacttgtgtgaatcgtgcacttcattggatccgatttaaggaaaggggagggtctatattgtgtttttgttttgaaagagagaggtttcaatcat |
8547922 |
T |
|
| Q |
469 |
ttccttctcct |
479 |
Q |
| |
|
||||||||||| |
|
|
| T |
8547923 |
ttccttctcct |
8547933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 8536222 - 8536113
Alignment:
| Q |
16 |
agtttggtgttgtgaattcttgcaatggcttgctttgtttgcgtcatccatttgaaggaagaccattagtaatttgcaatccagtcactggggagtttat |
115 |
Q |
| |
|
|||||| | ||||||||||||||||||| || ||||||||| | | |||| | |||| |||||||| || ||||| |||||||||||||||||||| |
|
|
| T |
8536222 |
agtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcactggggagtttat |
8536123 |
T |
|
| Q |
116 |
aagacttcct |
125 |
Q |
| |
|
|||||||||| |
|
|
| T |
8536122 |
aagacttcct |
8536113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 280 - 482
Target Start/End: Complemental strand, 9003930 - 9003739
Alignment:
| Q |
280 |
tccttgagataaacacacttggaacatcatcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgaatcttcattatcccactta |
379 |
Q |
| |
|
||||||||||| |||||| |||||| ||||||||||||||| |||||| ||||||||| | ||||| || || |||| ||||||| |||| |
|
|
| T |
9003930 |
tccttgagata--cacactgggaacaccatcatggagaaatgttgaagtggatcctcaactgtctat---------ttggagtcttaattatccgacttg |
9003842 |
T |
|
| Q |
380 |
tgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcct |
479 |
Q |
| |
|
||| ||||| || |||||||||||||||||||| | ||| ||| |||||||||||| ||| |||| ||||||||| ||||| |||||||| ||| |
|
|
| T |
9003841 |
tgtgaatggcgcacttcattggatcagatttgattttctgcaaatgtcaatattgtgtttcaatttggaaaatgagaggttccaatcttttccttcccct |
9003742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 8678557 - 8678439
Alignment:
| Q |
16 |
agtttggtgttgtgaattcttgcaatggcttgctttgtttgcgtcatccatttgaaggaagaccattagtaatttgcaatccagtcactggggagtttat |
115 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||| || |||||||| ||| || ||| | ||||| || ||| | ||||| |||||||| |
|
|
| T |
8678557 |
agtttggtgttgcgaattcttgcaatggcatgctttgtttgtgttgcccatttgagggacaccctttattgatttgtaacccacttactggcgagtttat |
8678458 |
T |
|
| Q |
116 |
aagacttcctaaagctact |
134 |
Q |
| |
|
|||||||| | |||||||| |
|
|
| T |
8678457 |
aagacttcatgaagctact |
8678439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 133
Target Start/End: Complemental strand, 8637606 - 8637489
Alignment:
| Q |
16 |
agtttggtgttgtgaattcttgcaatggcttgctttgtttgcgtcatccatttgaaggaagaccattagtaatttgcaatccagtcactggggagtttat |
115 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| || |||| ||| | | || ||| |||||||| || ||||||||||||||||| |
|
|
| T |
8637606 |
agtttggtgttgcgaattcttgcaatggcttgctttgtttgtgttgcccatctgacgaacaccctttatcgatttgcaacccggtcactggggagtttat |
8637507 |
T |
|
| Q |
116 |
aagacttcctaaagctac |
133 |
Q |
| |
|
| ||||||| ||||||| |
|
|
| T |
8637506 |
taaacttcctgaagctac |
8637489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 11354043 - 11354079
Alignment:
| Q |
187 |
ttggcttccaacctaaaactaatgaatataaggtgat |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11354043 |
ttggcttccaacctaaaactaatgaatataaggtgat |
11354079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 11373350 - 11373314
Alignment:
| Q |
187 |
ttggcttccaacctaaaactaatgaatataaggtgat |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11373350 |
ttggcttccaacctaaaactaatgaatataaggtgat |
11373314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 702 - 877
Target Start/End: Original strand, 1600336 - 1600508
Alignment:
| Q |
702 |
tggccggtaaaacactttgaagagggggctgccatattgttatatcattcctgcaattgtcttatctactatgaacccgagaaacatgctttcaaagttt |
801 |
Q |
| |
|
|||||| || ||||||||||||| || |||||||||||||||||| ||| | |||||| | ||||| |||||||| | |||| || | ||||| || |
|
|
| T |
1600336 |
tggccgatacaacactttgaagaaggtgctgccatattgttatatgattac---aattgtttaatctattatgaacctgcgaaatatcgatgcaaagctt |
1600432 |
T |
|
| Q |
802 |
ttcgaattcacggcacttcttccgaatttgttgaaataattccacatgttccaagtctaatctcattgaaggatgt |
877 |
Q |
| |
|
|| |||||| || | | ||| || | | |||||||||| || ||| ||||||||||||| |||||||||||||| |
|
|
| T |
1600433 |
ttgaaattcatgggagtcgttcagattgttttgaaataatcccgcatattccaagtctaatttcattgaaggatgt |
1600508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 2844436 - 2844475
Alignment:
| Q |
16 |
agtttggtgttgtgaattcttgcaatggcttgctttgttt |
55 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2844436 |
agtttggcattgtgaattcttgcaatggcttgctttgttt |
2844475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 2856269 - 2856308
Alignment:
| Q |
16 |
agtttggtgttgtgaattcttgcaatggcttgctttgttt |
55 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2856269 |
agtttggcattgtgaattcttgcaatggcttgctttgttt |
2856308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 2873879 - 2873918
Alignment:
| Q |
16 |
agtttggtgttgtgaattcttgcaatggcttgctttgttt |
55 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2873879 |
agtttggcattgtgaattcttgcaatggcttgctttgttt |
2873918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 2904385 - 2904424
Alignment:
| Q |
16 |
agtttggtgttgtgaattcttgcaatggcttgctttgttt |
55 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2904385 |
agtttggcattgtgaattcttgcaatggcttgctttgttt |
2904424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 9074277 - 9074315
Alignment:
| Q |
182 |
tggttttggcttccaacctaaaactaatgaatataaggt |
220 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
9074277 |
tggttttggattccaacctaatactaatgaatataaggt |
9074315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 11353889 - 11353926
Alignment:
| Q |
18 |
tttggtgttgtgaattcttgcaatggcttgctttgttt |
55 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
11353889 |
tttggtgtggtgaattcctgcaatggcttgctttgttt |
11353926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 151; Significance: 2e-79; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 180 - 880
Target Start/End: Complemental strand, 35780382 - 35779712
Alignment:
| Q |
180 |
gctggttttggcttccaacctaaaactaatgaatataaggtgatgtatatttgggacagatatgttagacgaggcaatggctgggtgtttgatcatattg |
279 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| | || ||| ||| ||||| ||| | ||||| ||||||||||||| | || |
|
|
| T |
35780382 |
gctggttttggtttccaacctaaaactaatgaatataaggtgataaaaatatggataagacatgttcaacgtgccaatgattgggtgtttgatcgtgtta |
35780283 |
T |
|
| Q |
280 |
tccttgagataaacacacttggaacatcatcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgaatcttcattatcccactta |
379 |
Q |
| |
|
|||| || ||||||||||||||| || |||||||||||| || |||||| ||||||| ||||||||| ||| | ||| | |||||||||| |
|
|
| T |
35780282 |
tcctcgaaataaacacacttggagcaccatcatggagaactgttgaagtggatcctcgtatttctatt---tcaagc------cttaagtatcccacttg |
35780192 |
T |
|
| Q |
380 |
tgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcct |
479 |
Q |
| |
|
||| ||||||| |||||| ||||||| |||||||| || ||| ||| ||||| ||||| ||||| ||| ||||||||||||| |||||||||||||| |
|
|
| T |
35780191 |
tgtgaatggtgtgcttcactggatcaaatttgaggggcaacaaaagtcaatattatgtttttgttttgaaggtgagaggttgcagccatttccttctcct |
35780092 |
T |
|
| Q |
480 |
cca---gtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcgatacatattctt |
576 |
Q |
| |
|
||| |||||| || ||| ||||| | ||||||| ||||||||||||||| |||||| ||||||||||| || ||| || |
|
|
| T |
35780091 |
ccacatgtgtttggaattcatgataatag---------------gcgtattagcatgggagaattaaagggatttctttacatttgtgacttgaattttt |
35780007 |
T |
|
| Q |
577 |
ttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactttggtcagtcctttgggcagacc |
676 |
Q |
| |
|
|| ||||||| ||||||||||||||||||| ||||||||| |||||| ||||||||||||||||| ||||| |||| ||||| | || | ||| || |
|
|
| T |
35780006 |
ttgttgatgttacaatgtgggttatgaatgagcatggcattgaagaatcgtggactaaggtttacaacattgagacttcggtcaattctctaggctatcc |
35779907 |
T |
|
| Q |
677 |
tgattcgcagcgttatggtttatgttggccggtaaaacactttgaagagggggctgccatattgttatatcattcctgcaattgtcttatctactatgaa |
776 |
Q |
| |
|
| ||| | ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||| ||||||||| |||| |
|
|
| T |
35779906 |
tatttcaccgcgttatggtttatgttggccggtaaaaccctttga---------tgccatattgttatatcattcatgcaattgttttatctactttgaa |
35779816 |
T |
|
| Q |
777 |
cccgagaaacatgctttcaaagtttttcgaattcacggcacttcttccgaatttgttgaaataattccacatgttccaagtctaatctcattgaaggatg |
876 |
Q |
| |
|
|| |||||| ||| | ||||||||||||||||| || ||| ||| ||| ||||||| ||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
35779815 |
cctgagaaatatggatacaaagtttttcgaattcgtgggactcgttcaaaatctgttgaagtaattccacatattccaagtctaatatcattgaaggatg |
35779716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 180 - 753
Target Start/End: Original strand, 48361389 - 48361953
Alignment:
| Q |
180 |
gctggttttggcttccaacctaaaactaatgaatataaggtgatgtatatttgggacagatatgttagacgaggcaatggctgggtgtttgatcatattg |
279 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| | || |||| ||| |||||| ||| | ||||| |||| |||||| | | | |
|
|
| T |
48361389 |
gctggttttggtttccaacctaaaactaatgaatataaggtgataaacatgtgggtgagacatgttaaacgtgccaatgcgtgggagtttgagcgtgtga |
48361488 |
T |
|
| Q |
280 |
tccttgagataaacacacttggaacatcatcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgaatcttcattatcccactta |
379 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||| |||| |||||| |||||||| |||||| || | || ||| | |||||||||| |
|
|
| T |
48361489 |
tccttgagataaacacacttggaacaccatcctggaggaatgttgaagtggatcctcacatttctttt---------tcgagtctcgagtatcccacttg |
48361579 |
T |
|
| Q |
380 |
tgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcct |
479 |
Q |
| |
|
||| |||||||| ||||||||||| |||||||||| | | ||||||| ||||||| ||||||||| |||||||||||| |||| ||||||||||||||| |
|
|
| T |
48361580 |
tgtgaatggtgcacttcattggataagatttgagggtcagcaaaggtcaatattgtttttctgttttgaaagtgagagggtgcagtcatttccttctcct |
48361679 |
T |
|
| Q |
480 |
cca---gtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcga-tacatattct |
575 |
Q |
| |
|
||| |||||| |||||| ||||||||| ||| | ||||| || |||| ||||||||||||||| |||||| ||||||||||| || | | || |
|
|
| T |
48361680 |
ccacatgtgtttggaaatcataataatggaattcttggtaacaggcatattagcatgggagaattaaagggatttctttacatttgtgactcgacctttg |
48361779 |
T |
|
| Q |
576 |
tttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactttggtcagtcctttgggcagac |
675 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||| |||| |||||||| ||||||||||||||| || ||||| | ||| ||||| | |||| |
|
|
| T |
48361780 |
catc-tgatgtttcaatgtgggttatgaatgaatatggtattgaagaatcatagactaaggtttacaacatcaatactgcgttcaatccttcgagcagtt |
48361878 |
T |
|
| Q |
676 |
ctgattcgcagcgttatggtttatgttggccggtaaaacactttgaagagggggctgccatattgttatatcattcct |
753 |
Q |
| |
|
|| ||| || || | |||| |||||| |||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
48361879 |
ttgcttcttggcattcagcttta---tggccgataaaacactttgaagaaggtgctgccatattgttatatcattcct |
48361953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 141
Target Start/End: Complemental strand, 35780541 - 35780424
Alignment:
| Q |
25 |
ttgtgaattcttgcaatggcttgctttgtttgcgtcatccatttgaaggaagaccatt-agtaatttgcaatccagtcactggggagtttataagacttc |
123 |
Q |
| |
|
|||| |||||||||||||| |||||||||||| | |||||| | | || ||| || ||| |||||||| |||||||| |||||||| |||||||||| |
|
|
| T |
35780541 |
ttgtcaattcttgcaatggtttgctttgtttgtctaatccatataccgaaaaaccctttagtgatttgcaacccagtcacgggggagttcataagacttc |
35780442 |
T |
|
| Q |
124 |
ctaaagctactgcgactc |
141 |
Q |
| |
|
|| |||||||| |||||| |
|
|
| T |
35780441 |
ctgaagctactacgactc |
35780424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 148; Significance: 1e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 180 - 811
Target Start/End: Complemental strand, 9443667 - 9443051
Alignment:
| Q |
180 |
gctggttttggcttccaacctaaaactaatgaatataaggtgatgtatatttgggacagatatgttagacgaggcaatggctgggtgtttgatcatattg |
279 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| || | ||| ||| |||||| || || |||| ||||||||||| | | | |
|
|
| T |
9443667 |
gctggttttggattccaacctaaaactaatgaatataaggtaataagcgtgtggataagacatgttaaacaagccaatcagtgggtgtttgagcgtgtga |
9443568 |
T |
|
| Q |
280 |
tccttgagataaacacacttggaacatcatcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgaatcttcattatcccactta |
379 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||| |||||| ||||||||||||||| || | || ||| | |||||||||| |
|
|
| T |
9443567 |
tccttgagataaacacacttggaacaacatcctggagaaatgttgaagtggatcctcaaatttctttt---------tcgagtctaaagtatcccacttg |
9443477 |
T |
|
| Q |
380 |
tgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcct |
479 |
Q |
| |
|
||| |||||||| ||||||||||| |||||||||||||| ||||||| |||||| |||||| || ||||||||||||||||| ||||||||||||||| |
|
|
| T |
9443476 |
tgtgaatggtgcacttcattggataagatttgaggatgagcaaaggtcaatattggttttctgctttgaaagtgagaggttgcagtcatttccttctcct |
9443377 |
T |
|
| Q |
480 |
cca---gtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcgatac-atattct |
575 |
Q |
| |
|
||| |||||| ||||| |||||| | | || ||| || |||| ||||||||||||||| |||||| || |||||||| ||| | | || |
|
|
| T |
9443376 |
ccacatgtgtttggaaatc---ataatgtttattgtagta---ggcctattagcatgggagaattaaagggatttctatacatttgtgatccgaccttta |
9443283 |
T |
|
| Q |
576 |
tttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactttggtcagtcctttgggcagac |
675 |
Q |
| |
|
| || | ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||| | ||| |||||||| | |
|
|
| T |
9443282 |
tatc-taatgtttcaatgtgggttatgaatgaatatggcattggagaatcatggactaagatttacaacatcgatacttcgttcaatcctttgg---atc |
9443187 |
T |
|
| Q |
676 |
ctgattcgcagcgttatggtttatgttggccggtaaaacactttgaagagggggctgccatattgttatatcattcctgcaattgtcttatctactatga |
775 |
Q |
| |
|
|| | | | | ||||||||||| | |||||| |||||||||||||||| || ||||||||||||| ||||||||||| ||||||| ||| |||||| || |
|
|
| T |
9443186 |
gtgttccacggggttatggtttaagctggccgataaaacactttgaagaaggtgctgccatattgtcatatcattccttcaattgttttacctactacga |
9443087 |
T |
|
| Q |
776 |
acccgagaaacatgctttcaaagtttttcgaattca |
811 |
Q |
| |
|
||| || ||| ||| |||||||||||||||||||| |
|
|
| T |
9443086 |
acctgaaaaatatgggttcaaagtttttcgaattca |
9443051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 3e-26; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 689 - 880
Target Start/End: Complemental strand, 5130876 - 5130681
Alignment:
| Q |
689 |
ttatggtttatgtt---ggccggtaaaacactttgaagagggggctgccatattgttatatcattcctgcaattgtcttatc-tactatgaacccgagaa |
784 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||| || || ||| ||||||| ||||| |
|
|
| T |
5130876 |
ttatggtttatgtttttggccggtaaaacactttgaagagggtgctgccatattgctatatcattcctgcaactgttttgtcttaccatgaaccggagaa |
5130777 |
T |
|
| Q |
785 |
acatgctttcaaagtttttcgaattcacggcacttcttccgaatttgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgt |
880 |
Q |
| |
|
| || | |||||||||||||||||| || |||| ||| || ||||| ||||||||||| || |||||||||| ||| | |||||| |||| |
|
|
| T |
5130776 |
atatagatacaaagtttttcgaattcatgggacttgttcaaaaaagattgaagtaattccacatatttcaagtctaatttcactaaaggatattgt |
5130681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 581 - 643
Target Start/End: Original strand, 26324202 - 26324264
Alignment:
| Q |
581 |
tgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaa |
643 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
26324202 |
tgatgtttcaatgtgggttatgaatgaatatggcactggagaatcatggactaagatttacaa |
26324264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 432 - 561
Target Start/End: Complemental strand, 5131093 - 5130964
Alignment:
| Q |
432 |
ttgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcctcca---gtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattc |
528 |
Q |
| |
|
||||||||| |||| ||||||||||| ||||||||||| |||||||||||| |||||| |||||| |||||| ||| | | | ||||| ||| |
|
|
| T |
5131093 |
ttgtgtttcagttttgaaagtgagagattgcaatcattcccttctcctccacacgtgtttgaaaatc---ataatgatttttatggcaccgagcatatcg |
5130997 |
T |
|
| Q |
529 |
gcatgggagaattaaggggattactttacattt |
561 |
Q |
| |
|
||||||||||||||| |||||| |||||||||| |
|
|
| T |
5130996 |
gcatgggagaattaaagggatttctttacattt |
5130964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 5131236 - 5131169
Alignment:
| Q |
280 |
tccttgagataaacacacttggaacatcatcatggagaaatgctgaagtagatcctcaaatttctatt |
347 |
Q |
| |
|
||||||||||| |||| |||||||||| ||||||||||||| |||||| |||| ||| ||||||||| |
|
|
| T |
5131236 |
tccttgagatacacactcttggaacattgtcatggagaaatgttgaagtggatcttcagatttctatt |
5131169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 4e-25; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 583 - 654
Target Start/End: Complemental strand, 16716518 - 16716447
Alignment:
| Q |
583 |
atgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactt |
654 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
16716518 |
atgttacaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttaccacattgatactt |
16716447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 370 - 484
Target Start/End: Complemental strand, 16716755 - 16716641
Alignment:
| Q |
370 |
atcccacttatgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatt |
469 |
Q |
| |
|
||||||||| ||| |||||||| ||||||||| ||| |||||||| |||| ||||||||||||||| ||||| |||||||||| |||||| ||||| |
|
|
| T |
16716755 |
atcccacttgtgtgaatggtgcacttcattggttcacatttgagggaagggaaatgtctatattgtgtttttgttttgaaagtgagaagttgcattcatt |
16716656 |
T |
|
| Q |
470 |
tccttctcctccagt |
484 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
16716655 |
tccttctcccccagt |
16716641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 838 - 876
Target Start/End: Complemental strand, 16716264 - 16716226
Alignment:
| Q |
838 |
taattccacatgttccaagtctaatctcattgaaggatg |
876 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16716264 |
taattccacatattccaagtctaatctcattgaaggatg |
16716226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 705 - 751
Target Start/End: Complemental strand, 16716409 - 16716363
Alignment:
| Q |
705 |
ccggtaaaacactttgaagagggggctgccatattgttatatcattc |
751 |
Q |
| |
|
||||||||||||||||||||||| |||| | |||||||||||||||| |
|
|
| T |
16716409 |
ccggtaaaacactttgaagagggtgctggcgtattgttatatcattc |
16716363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 16716939 - 16716886
Alignment:
| Q |
180 |
gctggttttggcttccaacctaaaactaatgaatataaggtgatgtatatttgg |
233 |
Q |
| |
|
||||||||||| ||| | |||||||||||||||||||| ||||| |||||||| |
|
|
| T |
16716939 |
gctggttttggtttctatcctaaaactaatgaatataaagtgatacatatttgg |
16716886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627 (Bit Score: 57; Significance: 2e-23; HSPs: 4)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 524 - 656
Target Start/End: Complemental strand, 4878 - 4746
Alignment:
| Q |
524 |
tattcgcatgggagaattaaggggattactttacatttgcgatacatattcttttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaa |
623 |
Q |
| |
|
|||| ||||||||||||||| |||||| ||||||||||| || || | || || ||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4878 |
tattagcatgggagaattaaagggatttctttacatttgtgactcaaactccttaaaatatgttacaatgtgggttatgaatgaatatggcattggtgaa |
4779 |
T |
|
| Q |
624 |
tcatggactaaggtttacaagattgatactttg |
656 |
Q |
| |
|
|||||||||||||||||| | ||| |||||||| |
|
|
| T |
4778 |
tcatggactaaggtttaccacattaatactttg |
4746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 370 - 484
Target Start/End: Complemental strand, 5054 - 4942
Alignment:
| Q |
370 |
atcccacttatgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatt |
469 |
Q |
| |
|
||||||||| ||| |||||||| |||||||||||||||||||||| | |||| ||| |||||||||| ||||| || |||||||||||||||||||| |
|
|
| T |
5054 |
atcccacttgtgtgaatggtgcacttcattggatcagatttgagggaaaggaaacgtc--tattgtgtttttgttttgacagtgagaggttgcaatcatt |
4957 |
T |
|
| Q |
470 |
tccttctcctccagt |
484 |
Q |
| |
|
||| ||||| ||||| |
|
|
| T |
4956 |
tccctctcccccagt |
4942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 832 - 876
Target Start/End: Complemental strand, 4583 - 4539
Alignment:
| Q |
832 |
ttgaaataattccacatgttccaagtctaatctcattgaaggatg |
876 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4583 |
ttgaagtaattccacatattccaagtctaatctcattgaaggatg |
4539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 705 - 751
Target Start/End: Complemental strand, 4709 - 4663
Alignment:
| Q |
705 |
ccggtaaaacactttgaagagggggctgccatattgttatatcattc |
751 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||| ||||||| |
|
|
| T |
4709 |
ccggtaaaacactttgaagagggtgctgctgtattgttacatcattc |
4663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University