View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8459_low_10 (Length: 251)
Name: NF8459_low_10
Description: NF8459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8459_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 37 - 244
Target Start/End: Complemental strand, 2910795 - 2910588
Alignment:
| Q |
37 |
acatttaaataacactaatgtgaatcaaagtttggcagcaatatgatcagaaaaagaataggcttcaaacccacacttcccaaccttaaaaccctcaaac |
136 |
Q |
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| T |
2910795 |
acatttaaataacactaatgtgaatcaaagtttggcagcaatatgttcagaaaaagaataggcttcaaacccacacttcccaaccttaaaaccctcaaac |
2910696 |
T |
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| Q |
137 |
aaatccatgctttgatgatcatcaacggtttcaacaacaacgttaacttcctcggaaatctcgtcttaacaatctcaacctcacttgtgggtccctctgc |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2910695 |
aaatccatgctttgatgatcatcaacggtttcaacaacaacgttaacttcctcggagatctcgtcttaacaatctcaacctcacttgtgggtcccactgc |
2910596 |
T |
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| Q |
237 |
aacaccaa |
244 |
Q |
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||| |||| |
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| T |
2910595 |
aactccaa |
2910588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 32
Target Start/End: Complemental strand, 2910817 - 2910787
Alignment:
| Q |
2 |
ttcttaaaaagtgtagaatactacatttaaa |
32 |
Q |
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| T |
2910817 |
ttcttaaaaagtgtagaatactacatttaaa |
2910787 |
T |
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