View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8459_low_11 (Length: 245)

Name: NF8459_low_11
Description: NF8459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8459_low_11
NF8459_low_11
[»] chr5 (4 HSPs)
chr5 (6-178)||(11336209-11336381)
chr5 (73-178)||(43379448-43379553)
chr5 (190-238)||(11336399-11336449)
chr5 (73-178)||(43378572-43378677)
[»] chr6 (4 HSPs)
chr6 (139-178)||(13208225-13208264)
chr6 (118-176)||(3163534-3163592)
chr6 (19-61)||(10740746-10740788)
chr6 (73-178)||(13207346-13207451)
[»] chr2 (3 HSPs)
chr2 (125-172)||(3466658-3466705)
chr2 (6-71)||(8985740-8985805)
chr2 (125-178)||(39062863-39062916)
[»] chr8 (2 HSPs)
chr8 (87-153)||(3582072-3582138)
chr8 (5-61)||(5621847-5621903)
[»] chr7 (3 HSPs)
chr7 (125-178)||(35752377-35752430)
chr7 (6-71)||(46964298-46964363)
chr7 (125-173)||(46294693-46294741)
[»] chr4 (1 HSPs)
chr4 (6-71)||(16869676-16869741)
[»] chr3 (3 HSPs)
chr3 (5-61)||(22794287-22794343)
chr3 (5-61)||(22796052-22796108)
chr3 (73-141)||(40613800-40613868)


Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 6 - 178
Target Start/End: Original strand, 11336209 - 11336381
Alignment:
Q  6 gaagcgacgagtaattcaagaagaatcaaaccatgctcttgataccatgtaaacaacacaaatatacgagttcatctttcttccattcaggaagcctcca 105  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  11336209 gaagcgacgagtaatttaagaagaatcaaaccatgctcttgataccatgtaaacaacacaaatacacgagttcatctttcttccatttaggaagcctcca 11336308  T
Q  106 tttttcccggtccagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaaggtttg 178  Q
    |||| |||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11336309 ttttccccggtccagcttttaggtgtgtgacatgtgacaaacataaaagcaagggttaggattaaaaggtttg 11336381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 73 - 178
Target Start/End: Complemental strand, 43379553 - 43379448
Alignment:
Q  73 gagttcatctttcttccattcaggaagcctccatttttcccggtccagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaa 172  Q
    ||||||||||||  |||||| | |||| |||||||| ||||  ||||| | |||||||| ||||||||| |||| ||||||||||||||| |||||||||    
T  43379553 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtggcaaaaataaaagcaagggttgggattaaaa 43379454  T
Q  173 ggtttg 178  Q
    ||||||    
T  43379453 ggtttg 43379448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 11336399 - 11336449
Alignment:
Q  190 tagatgaaca--aaaaagcctacacgtgcgtctcctcttctcttctctctg 238  Q
    ||||||||||  |||||||||||||| ||||||||||||||||||||||||    
T  11336399 tagatgaacacaaaaaagcctacacgcgcgtctcctcttctcttctctctg 11336449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 178
Target Start/End: Original strand, 43378572 - 43378677
Alignment:
Q  73 gagttcatctttcttccattcaggaagcctccatttttcccggtccagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaa 172  Q
    ||||||||||||  |||||| | |||| ||||||||  |||  || || | |||||||| ||||| ||| |||| |||||||||||||||  ||||||||    
T  43378572 gagttcatctttgctccatttatgaaggctccatttaccccattctagctcttagatgtgtgacacgtggcaaaaataaaagcaagggttgagattaaaa 43378671  T
Q  173 ggtttg 178  Q
    ||||||    
T  43378672 ggtttg 43378677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 178
Target Start/End: Complemental strand, 13208264 - 13208225
Alignment:
Q  139 gtgacaaacataaaagcaagggttaggattaaaaggtttg 178  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  13208264 gtgacaaaaataaaagcaagggttgggattaaaaggtttg 13208225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 3163534 - 3163592
Alignment:
Q  118 cagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaaggtt 176  Q
    |||||| |||||||  |||||||| |||| |||||| ||||||||||||| ||||||||    
T  3163534 cagtttatagatgtgcgacatgtgtcaaaaataaaaccaagggttaggatcaaaaggtt 3163592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 10740788 - 10740746
Alignment:
Q  19 attcaagaagaatcaaaccatgctcttgataccatgtaaacaa 61  Q
    ||||||| || |||||||||||||||||||||||||| |||||    
T  10740788 attcaaggaggatcaaaccatgctcttgataccatgttaacaa 10740746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 178
Target Start/End: Original strand, 13207346 - 13207451
Alignment:
Q  73 gagttcatctttcttccattcaggaagcctccatttttcccggtccagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaa 172  Q
    ||||||||||||  |||||| | |||| || |||||  |||  ||||| | |||||||| ||||| ||| |||| |||||||||||||||  ||||||||    
T  13207346 gagttcatctttactccatttacgaaggctacatttaccccattccagctcttagatgtgtgacacgtggcaaaaataaaagcaagggttgagattaaaa 13207445  T
Q  173 ggtttg 178  Q
    | ||||    
T  13207446 gatttg 13207451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 172
Target Start/End: Original strand, 3466658 - 3466705
Alignment:
Q  125 tagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaa 172  Q
    ||||||| |||||| ||||||| |||||| ||||||||||||||||||    
T  3466658 tagatgtgtgacatatgacaaaaataaaatcaagggttaggattaaaa 3466705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 8985805 - 8985740
Alignment:
Q  6 gaagcgacgagtaattcaagaagaatcaaaccatgctcttgataccatgtaaacaacacaaatata 71  Q
    |||||||||| ||| ||||| ||  |||||||| |||||||||||||||| ||||| ||| |||||    
T  8985805 gaagcgacgactaaatcaaggagggtcaaaccacgctcttgataccatgttaacaatacagatata 8985740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 39062916 - 39062863
Alignment:
Q  125 tagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaaggtttg 178  Q
    ||||||||||||||||| |||  |||||| ||| || |||||||||||||||||    
T  39062916 tagatgtatgacatgtggcaacaataaaatcaatggctaggattaaaaggtttg 39062863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 153
Target Start/End: Complemental strand, 3582138 - 3582072
Alignment:
Q  87 tccattcaggaagcctccatttttcccggtccagtttttagatgtatgacatgtgacaaacataaaa 153  Q
    |||||| |||||||||| |||| |||  ||| | |||||||||||||||||||||| ||| ||||||    
T  3582138 tccatttaggaagcctctatttatccatgtctattttttagatgtatgacatgtgagaaaaataaaa 3582072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 5621903 - 5621847
Alignment:
Q  5 agaagcgacgagtaattcaagaagaatcaaaccatgctcttgataccatgtaaacaa 61  Q
    ||||||||| | ||||| ||| || ||||||||||||||| |||||||||| |||||    
T  5621903 agaagcgacaactaatttaaggaggatcaaaccatgctctagataccatgtcaacaa 5621847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 35752377 - 35752430
Alignment:
Q  125 tagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaaggtttg 178  Q
    ||||||||||||||||| |||| |||||| ||| ||||  ||||||||||||||    
T  35752377 tagatgtatgacatgtggcaaaaataaaatcaatggttgtgattaaaaggtttg 35752430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 46964298 - 46964363
Alignment:
Q  6 gaagcgacgagtaattcaagaagaatcaaaccatgctcttgataccatgtaaacaacacaaatata 71  Q
    |||||||||| ||| ||||| ||  |||||||| |||||||||||||||| ||||| ||| |||||    
T  46964298 gaagcgacgactaaatcaaggagggtcaaaccacgctcttgataccatgttaacaatacagatata 46964363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 46294693 - 46294741
Alignment:
Q  125 tagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaag 173  Q
    ||||||| |||||| ||||||  |||||| |||||||||||||||||||    
T  46294693 tagatgtgtgacatatgacaataataaaatcaagggttaggattaaaag 46294741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 16869741 - 16869676
Alignment:
Q  6 gaagcgacgagtaattcaagaagaatcaaaccatgctcttgataccatgtaaacaacacaaatata 71  Q
    |||||||||| ||| ||||| ||  |||||||| |||||||||||||||| ||||| ||| |||||    
T  16869741 gaagcgacgactaaatcaaggagggtcaaaccacgctcttgataccatgttaacaatacagatata 16869676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 22794287 - 22794343
Alignment:
Q  5 agaagcgacgagtaattcaagaagaatcaaaccatgctcttgataccatgtaaacaa 61  Q
    ||||||||| | ||||| ||| || ||||||||||||||| |||||||||| |||||    
T  22794287 agaagcgacaactaatttaaggaggatcaaaccatgctctagataccatgtcaacaa 22794343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 22796052 - 22796108
Alignment:
Q  5 agaagcgacgagtaattcaagaagaatcaaaccatgctcttgataccatgtaaacaa 61  Q
    ||||||||| | ||||| ||| || ||||||||||||||| |||||||||| |||||    
T  22796052 agaagcgacaactaatttaaggaggatcaaaccatgctctagataccatgtcaacaa 22796108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 141
Target Start/End: Complemental strand, 40613868 - 40613800
Alignment:
Q  73 gagttcatctttcttccattcaggaagcctccatttttcccggtccagtttttagatgtatgacatgtg 141  Q
    ||||||||||||  |||||| || |||||||||||| |||| || || ||| ||||||| |||||||||    
T  40613868 gagttcatctttgctccatttagcaagcctccatttatccctgttcattttgtagatgtctgacatgtg 40613800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University