View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8459_low_12 (Length: 238)

Name: NF8459_low_12
Description: NF8459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8459_low_12
NF8459_low_12
[»] chr6 (5 HSPs)
chr6 (1-222)||(30941419-30941640)
chr6 (1-216)||(30976876-30977091)
chr6 (1-216)||(30983315-30983530)
chr6 (1-216)||(30989479-30989694)
chr6 (4-222)||(31009200-31009421)


Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 30941419 - 30941640
Alignment:
Q  1 tttttccttcatcatcaacatctttctcttccttgcactcttcttaatcccaatacatatcactagtgacgttgaaagcttcaaatcttgtgcacctttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30941419 tttttccttcatcatcaacatctttctcttccttgcactcttcataatcccaatacatatcactagtgacgttgaaagcttcaaatcttgtgcacctttt 30941518  T
Q  101 agttgtggaaatttcatcaacattagttatccattttggagtgttaacaaccaaccaagttattgtggccacccaaacttcaaccttgattgtaaacatg 200  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30941519 agttgtggaaatttcaccaacgttagttatccattttggagtgttaacaaccaaccaagttattgtggccacccaaacttcaaccttgattgtgaacatg 30941618  T
Q  201 gcaacttgactattgagatcaa 222  Q
    ||||||||||||||||||||||    
T  30941619 gcaacttgactattgagatcaa 30941640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 30976876 - 30977091
Alignment:
Q  1 tttttccttcatcatcaacatctttctcttccttgcactcttcttaatcccaatacatatcactagtgacgttgaaagcttcaaatcttgtgcacctttt 100  Q
    ||||||||||||||||||||||| |||||| ||  ||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  30976876 tttttccttcatcatcaacatctgtctcttactctcactcttcttaattccaatacatgtcactagtgatgttgaaagcttcaaatcttgtgcacctttt 30976975  T
Q  101 agttgtggaaatttcatcaacattagttatccattttggagtgttaacaaccaaccaagttattgtggccacccaaacttcaaccttgattgtaaacatg 200  Q
    |||||||||||||||| ||| |||||||| |||||||||||| |||||||||||| || ||||||||| || ||||||||||| ||||||||| ||||||    
T  30976976 agttgtggaaatttcaccaatattagttacccattttggagtattaacaaccaacaaaattattgtggtcatccaaacttcaaacttgattgtgaacatg 30977075  T
Q  201 gcaacttgactattga 216  Q
    ||||||||||||||||    
T  30977076 gcaacttgactattga 30977091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 30983315 - 30983530
Alignment:
Q  1 tttttccttcatcatcaacatctttctcttccttgcactcttcttaatcccaatacatatcactagtgacgttgaaagcttcaaatcttgtgcacctttt 100  Q
    ||||||||||||||||||||||| |||||| ||  ||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  30983315 tttttccttcatcatcaacatctgtctcttactctcactcttcttaattccaatacatgtcactagtgatgttgaaagcttcaaatcttgtgcacctttt 30983414  T
Q  101 agttgtggaaatttcatcaacattagttatccattttggagtgttaacaaccaaccaagttattgtggccacccaaacttcaaccttgattgtaaacatg 200  Q
    |||||||||||||||| ||| |||||||| |||||||||||| |||||||||||| || ||||||||| || ||||||||||| ||||||||| ||||||    
T  30983415 agttgtggaaatttcaccaatattagttacccattttggagtattaacaaccaacaaaattattgtggtcatccaaacttcaaacttgattgtgaacatg 30983514  T
Q  201 gcaacttgactattga 216  Q
    ||||||||||||||||    
T  30983515 gcaacttgactattga 30983530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 30989479 - 30989694
Alignment:
Q  1 tttttccttcatcatcaacatctttctcttccttgcactcttcttaatcccaatacatatcactagtgacgttgaaagcttcaaatcttgtgcacctttt 100  Q
    ||||||||||||||||||||||| |||||| ||  ||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  30989479 tttttccttcatcatcaacatctgtctcttactctcactcttcttaattccaatacatgtcactagtgatgttgaaagcttcaaatcttgtgcacctttt 30989578  T
Q  101 agttgtggaaatttcatcaacattagttatccattttggagtgttaacaaccaaccaagttattgtggccacccaaacttcaaccttgattgtaaacatg 200  Q
    |||||||||||||||| ||| |||||||| |||||||||||| |||||||||||| || ||||||||| || ||||||||||| ||||||||| ||||||    
T  30989579 agttgtggaaatttcaccaatattagttacccattttggagtattaacaaccaacaaaattattgtggtcatccaaacttcaaacttgattgtgaacatg 30989678  T
Q  201 gcaacttgactattga 216  Q
    ||||||||||||||||    
T  30989679 gcaacttgactattga 30989694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 31009200 - 31009421
Alignment:
Q  4 ttccttcatcatcaacatctttctcttccttgcactctt---cttaatcccaatacatatcactagtgacgttgaaagcttcaaatcttgtgcacctttt 100  Q
    |||| |||||||||||||||||||||||||  |||||||   |||||||||||||||| ||| |||||||| |||||||| |||||||||||||||||||    
T  31009200 ttccatcatcatcaacatctttctcttcctctcactcttcttcttaatcccaatacatgtcaatagtgacggtgaaagctacaaatcttgtgcacctttt 31009299  T
Q  101 agttgtggaaatttcatcaacattagttatccattttggagtgttaacaaccaaccaagttattgtggccacccaaacttcaaccttgattgtaaacatg 200  Q
    || |||||| |||||| |||||||||||| |||||||||||| |||||||||| | || ||||||||| || |||||||||    |||||||| ||||||    
T  31009300 agatgtggagatttcaccaacattagttacccattttggagtattaacaaccatcaaaattattgtggtcatccaaacttcggagttgattgtgaacatg 31009399  T
Q  201 gcaacttgactattgagatcaa 222  Q
    |||||||||||||||| |||||    
T  31009400 gcaacttgactattgaaatcaa 31009421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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