View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8459_low_13 (Length: 221)

Name: NF8459_low_13
Description: NF8459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8459_low_13
NF8459_low_13
[»] chr7 (2 HSPs)
chr7 (9-221)||(25272029-25272241)
chr7 (49-86)||(41739719-41739756)
[»] chr2 (3 HSPs)
chr2 (49-182)||(4753528-4753662)
chr2 (57-110)||(36669090-36669143)
chr2 (57-110)||(31622040-31622093)
[»] chr6 (4 HSPs)
chr6 (47-183)||(18191745-18191882)
chr6 (9-182)||(21396297-21396467)
chr6 (49-160)||(31855674-31855785)
chr6 (49-116)||(30758799-30758866)
[»] chr3 (2 HSPs)
chr3 (49-126)||(36163440-36163517)
chr3 (57-123)||(20884286-20884352)
[»] chr8 (2 HSPs)
chr8 (57-161)||(32565569-32565673)
chr8 (48-107)||(17864641-17864700)
[»] chr5 (3 HSPs)
chr5 (57-129)||(16306748-16306820)
chr5 (49-92)||(35968623-35968666)
chr5 (49-183)||(38921454-38921589)
[»] chr4 (5 HSPs)
chr4 (49-131)||(52190296-52190378)
chr4 (49-184)||(53226679-53226814)
chr4 (57-129)||(52189240-52189312)
chr4 (49-86)||(30830024-30830061)
chr4 (49-86)||(31409407-31409444)
[»] chr1 (4 HSPs)
chr1 (57-110)||(26529581-26529634)
chr1 (57-110)||(36574035-36574088)
chr1 (47-129)||(49917442-49917524)
chr1 (49-86)||(35063549-35063586)


Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 221
Target Start/End: Original strand, 25272029 - 25272241
Alignment:
Q  9 ggcaaacaatgcaactgtagtggcaagtgtaacataaacattaacactaagttaacgttttgaatgcatttgactaacataacatacatcgagggagttt 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||| |||    
T  25272029 ggcaaacaatgcaactgtagtggcaagtgtaacataaacattaacactaagttaacgttttgaatgcatttgactaactttacatacattgagggaattt 25272128  T
Q  109 tttattcattaaattgatccatgaaatagtctgatagtgactgacactttcagaacccaaataagggtttactcaaacggaaactcacttgtgagtgctc 208  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  25272129 tttattcattaaattgatccataaaatagtctgatagtgactgacactttcaggacccaaataaggatttactcaaacggaaactcacttgtgagtgctc 25272228  T
Q  209 tttaaactctaag 221  Q
    |||||||||||||    
T  25272229 tttaaactctaag 25272241  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 41739756 - 41739719
Alignment:
Q  49 ttaacactaagttaacgttttgaatgcatttgactaac 86  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  41739756 ttaacaccaagttaacgttttggatgcatttgactaac 41739719  T

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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 49 - 182
Target Start/End: Complemental strand, 4753662 - 4753528
Alignment:
Q  49 ttaacactaagttaacgttttgaatgcatttgactaacataacatacatcgagggagttttttattcattaaattgatccatgaaatagtctgatagtga 148  Q
    ||||||| |||||||||||||| |||||||||||||||| ||||||||| |||||||||||| ||||||| |||||||||| | | | ||||||||| ||    
T  4753662 ttaacaccaagttaacgttttggatgcatttgactaacaaaacatacattgagggagtttttgattcatttaattgatccagggactggtctgatagcga 4753563  T
Q  149 ctgacactttca-gaacccaaataagggtttactc 182  Q
      |||||||||| | |||||||  |||||||||||    
T  4753562 gagacactttcagggacccaaacgagggtttactc 4753528  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 36669090 - 36669143
Alignment:
Q  57 aagttaacgttttgaatgcatttgactaacataacatacatcgagggagttttt 110  Q
    |||||||||||||| |||||||||||||||| |||| |||| ||||||||||||    
T  36669090 aagttaacgttttggatgcatttgactaacagaacagacattgagggagttttt 36669143  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 31622040 - 31622093
Alignment:
Q  57 aagttaacgttttgaatgcatttgactaacataacatacatcgagggagttttt 110  Q
    |||||||||||||| ||||||||||| |||  |||| |||| ||||||||||||    
T  31622040 aagttaacgttttggatgcatttgacaaacggaacaaacattgagggagttttt 31622093  T

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Target: chr6 (Bit Score: 58; Significance: 1e-24; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 47 - 183
Target Start/End: Complemental strand, 18191882 - 18191745
Alignment:
Q  47 cattaacactaagttaacgttttgaatgcatttgactaacataacatacatcgagggagttttttattcattaaattgatccatgaaatagtctgatagt 146  Q
    |||||| || |||||||||||||| |||||||||||||||||||||||||| | |||||||||| |||||||||||||||  | | | | |||||||||     
T  18191882 cattaataccaagttaacgttttggatgcatttgactaacataacatacattgggggagtttttgattcattaaattgattgagggactggtctgatagc 18191783  T
Q  147 gactgacactttca-gaacccaaataagggtttactca 183  Q
    |   |||||||||| | |||||||| ||||||||||||    
T  18191782 gtgggacactttcagggacccaaatgagggtttactca 18191745  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 9 - 182
Target Start/End: Complemental strand, 21396467 - 21396297
Alignment:
Q  9 ggcaaacaatgcaactgtagtggcaagtgtaacataaacattaacactaagttaacgttttgaatgcatttgactaacataacatacatcgagggagttt 108  Q
    ||||||||||| | ||| |||||||||||||||  |  | ||||||| |||||| ||||||| ||| |||||||||| | ||||||||| |  |||||||    
T  21396467 ggcaaacaatgtagctgcagtggcaagtgtaacggac-cgttaacaccaagttagcgttttggatgtatttgactaaaagaacatacattggaggagttt 21396369  T
Q  109 tttattcattaaattgatccatgaaatagtctgatagtgactgacactttca-gaacccaaataagggtttactc 182  Q
    |||||||||||||||||| || |    |||||||||| || ||||||||||| | ||||||| | ||||||||||    
T  21396368 tttattcattaaattgatacagg---cagtctgatagcgagtgacactttcatggacccaaacaggggtttactc 21396297  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 49 - 160
Target Start/End: Complemental strand, 31855785 - 31855674
Alignment:
Q  49 ttaacactaagttaacgttttgaatgcatttgactaacataacatacatcgagggagttttttattcattaaattgatccatgaaatagtctgatagtga 148  Q
    ||||||| || |||| |||||| || |||||||||||||||||||||||   |||||||||| ||||||||||||||| || ||| | ||||||||| ||    
T  31855785 ttaacaccaaattaatgttttggatacatttgactaacataacatacattaggggagtttttgattcattaaattgattcaggaactggtctgatagcga 31855686  T
Q  149 ctgacactttca 160  Q
      ||||||||||    
T  31855685 gagacactttca 31855674  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 30758799 - 30758866
Alignment:
Q  49 ttaacactaagttaacgttttgaatgcatttgactaacataacatacatcgagggagttttttattca 116  Q
    ||||||| ||||||| |||||| |||||||||||||||| ||||||||| |||||||||||| |||||    
T  30758799 ttaacaccaagttaatgttttggatgcatttgactaacaaaacatacattgagggagtttttgattca 30758866  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 36163517 - 36163440
Alignment:
Q  49 ttaacactaagttaacgttttgaatgcatttgactaacataacatacatcgagggagttttttattcattaaattgat 126  Q
    ||||||| |||||||||||||| |||||||||||||||||||| ||||| | |||||||||| |||||||||||||||    
T  36163517 ttaacaccaagttaacgttttggatgcatttgactaacataacgtacattgggggagtttttgattcattaaattgat 36163440  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 20884352 - 20884286
Alignment:
Q  57 aagttaacgttttgaatgcatttgactaacataacatacatcgagggagttttttattcattaaatt 123  Q
    |||||||||||||| |||||||||||||| | |||||  || |  ||||||||| ||||||||||||    
T  20884352 aagttaacgttttggatgcatttgactaagagaacatgtattggaggagtttttgattcattaaatt 20884286  T

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Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 57 - 161
Target Start/End: Original strand, 32565569 - 32565673
Alignment:
Q  57 aagttaacgttttgaatgcatttgactaacataacatacatcgagggagttttttattcattaaattgatccatgaaatagtctgatagtgactgacact 156  Q
    |||||||||||||| |||||||||||||||||||| ||||| | |||||||||| |||||||||||||||| | | | | ||||||||| ||  ||||||    
T  32565569 aagttaacgttttggatgcatttgactaacataacgtacattgggggagtttttgattcattaaattgatcgagggactggtctgatagcgagggacact 32565668  T
Q  157 ttcag 161  Q
    |||||    
T  32565669 ttcag 32565673  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 17864641 - 17864700
Alignment:
Q  48 attaacactaagttaacgttttgaatgcatttgactaacataacatacatcgagggagtt 107  Q
    |||||||| ||||||| |||||| |||||||||||||||| || | |||| |||||||||    
T  17864641 attaacaccaagttaatgttttggatgcatttgactaacaaaatagacattgagggagtt 17864700  T

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Target: chr5 (Bit Score: 49; Significance: 3e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 16306748 - 16306820
Alignment:
Q  57 aagttaacgttttgaatgcatttgactaacataacatacatcgagggagttttttattcattaaattgatcca 129  Q
    |||||||||||||  ||||||||||||||||||||||||||  ||| ||||||| ||||||||||||||||||    
T  16306748 aagttaacgttttagatgcatttgactaacataacatacattaaggaagtttttgattcattaaattgatcca 16306820  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 35968623 - 35968666
Alignment:
Q  49 ttaacactaagttaacgttttgaatgcatttgactaacataaca 92  Q
    ||||||| |||||||||||||| |||||||||||||||| ||||    
T  35968623 ttaacaccaagttaacgttttggatgcatttgactaacaaaaca 35968666  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 183
Target Start/End: Complemental strand, 38921589 - 38921454
Alignment:
Q  49 ttaacactaagttaacgttttgaatgcatttgactaacataacatacatcgagggagttttttattcattaaattgatccatgaaatagtctgatagtga 148  Q
    ||||||| |||||||||||||| |||||||||||||||  ||||  ||| | ||||||||||  ||||||  ||||||| | | |   | ||||||||||    
T  38921589 ttaacaccaagttaacgttttggatgcatttgactaacgaaacaatcattgggggagtttttggttcatttcattgatctagggatgtgcctgatagtga 38921490  T
Q  149 ctgacactttca-gaacccaaataagggtttactca 183  Q
       ||||||||| | |||||||| ||||||||||||    
T  38921489 gcaacactttcagggacccaaatgagggtttactca 38921454  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 131
Target Start/End: Original strand, 52190296 - 52190378
Alignment:
Q  49 ttaacactaagttaacgttttgaatgcatttgactaacataacatacatcgagggagttttttattcattaaattgatccatg 131  Q
    ||||||| |||||||||||||| |||||||||||||||| |||| |||| | ||||||||||  ||| || ||||||||||||    
T  52190296 ttaacaccaagttaacgttttggatgcatttgactaacaaaacagacattgggggagtttttggttcgtttaattgatccatg 52190378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 49 - 184
Target Start/End: Complemental strand, 53226814 - 53226679
Alignment:
Q  49 ttaacactaagttaacgttttgaatgcatttgactaacataacatacatcgagggagttttttattcattaaattgatccatgaaatagtctgatagtga 148  Q
    ||||||||||||||||||||   |||||||||||||  | ||||||||| |  ||||||||| |||||||||| |||| ||   |  | |||||||||||    
T  53226814 ttaacactaagttaacgtttcagatgcatttgactattagaacatacattggaggagtttttgattcattaaactgattcagagaccaatctgatagtga 53226715  T
Q  149 ctgacactttcagaacccaaataagggtttactcaa 184  Q
     ||||||||  || |||||||| | |||||||||||    
T  53226714 gtgacacttcaaggacccaaatgaaggtttactcaa 53226679  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 52189312 - 52189240
Alignment:
Q  57 aagttaacgttttgaatgcatttgactaacataacatacatcgagggagttttttattcattaaattgatcca 129  Q
    |||||||||||||| |||||||||||||||  ||||||||| ||| |||||||| |||  || ||||||||||    
T  52189312 aagttaacgttttggatgcatttgactaacggaacatacattgagcgagtttttgatttgtttaattgatcca 52189240  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 30830061 - 30830024
Alignment:
Q  49 ttaacactaagttaacgttttgaatgcatttgactaac 86  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  30830061 ttaacaccaagttaacgttttggatgcatttgactaac 30830024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 31409444 - 31409407
Alignment:
Q  49 ttaacactaagttaacgttttgaatgcatttgactaac 86  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  31409444 ttaacaccaagttaacgttttggatgcatttgactaac 31409407  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 26529634 - 26529581
Alignment:
Q  57 aagttaacgttttgaatgcatttgactaacataacatacatcgagggagttttt 110  Q
    |||||||||||||| |||||||||||||||| |||| |||| ||||||||||||    
T  26529634 aagttaacgttttggatgcatttgactaacagaacaaacattgagggagttttt 26529581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 36574088 - 36574035
Alignment:
Q  57 aagttaacgttttgaatgcatttgactaacataacatacatcgagggagttttt 110  Q
    |||||||||||||| |||||||||||||||  |||| |||| ||||||||||||    
T  36574088 aagttaacgttttggatgcatttgactaacggaacagacattgagggagttttt 36574035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 129
Target Start/End: Complemental strand, 49917524 - 49917442
Alignment:
Q  47 cattaacactaagttaacgttttgaatgcatttgactaacataacatacatcgagggagttttttattcattaaattgatcca 129  Q
    ||||||||  |||||||| ||||| |||||||||||||||| | || |||    ||||||||||  |||||||||||||||||    
T  49917524 cattaacatcaagttaacattttggatgcatttgactaacagatcaaacaatacgggagtttttagttcattaaattgatcca 49917442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 35063549 - 35063586
Alignment:
Q  49 ttaacactaagttaacgttttgaatgcatttgactaac 86  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  35063549 ttaacaccaagttaacgttttggatgcatttgactaac 35063586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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