View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8459_low_15 (Length: 210)

Name: NF8459_low_15
Description: NF8459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8459_low_15
NF8459_low_15
[»] chr5 (3 HSPs)
chr5 (1-194)||(30440276-30440470)
chr5 (142-194)||(37718999-37719051)
chr5 (1-80)||(9695221-9695303)
[»] scaffold0405 (1 HSPs)
scaffold0405 (1-80)||(15205-15283)
[»] chr4 (1 HSPs)
chr4 (118-194)||(47521591-47521667)
[»] chr6 (2 HSPs)
chr6 (135-194)||(4092329-4092386)
chr6 (140-194)||(4436107-4436161)
[»] chr3 (1 HSPs)
chr3 (140-194)||(46594677-46594731)
[»] chr1 (1 HSPs)
chr1 (149-189)||(26496351-26496391)


Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 30440276 - 30440470
Alignment:
Q  1 ttgttgcttggattctcttttcttaaacttctctctgaattcagacctaaaaatcacaaaacaaaaatcatcagaatcaatggaacttcagcatgttgca 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30440276 ttgttgcttggattctcttttcttaaacctctctctgaattcagacctaaaaatcacaaaacaaaaatcatcagaatcaatggaacttcagcatgttgca 30440375  T
Q  101 aatcagatacaaatttgtatggccgattccagtacaggtttcactataa-aatttgtatacgatcactctatcagacacaaatcagatcgaaatt 194  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30440376 aatcagacacaaatttgtatggctgattccagtacaggtttcactataagaatttgtatacgatcactctatcagacacaaatcagatcgaaatt 30440470  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 37718999 - 37719051
Alignment:
Q  142 cactataaaatttgtatacgatcactctatcagacacaaatcagatcgaaatt 194  Q
    |||||||||||||||| ||| |||||||||||||||||||||| |||||||||    
T  37718999 cactataaaatttgtaaacggtcactctatcagacacaaatcaaatcgaaatt 37719051  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 9695303 - 9695221
Alignment:
Q  1 ttgttgcttggattctcttttcttaaacttctctctgaattcagacctaaaaatcacaa----aacaaaaatcatcagaatcaa 80  Q
    ||||||||||||||||| || ||| ||| |||||||||| |||||||||||||||||||    || ||||||||||||||||||    
T  9695303 ttgttgcttggattctcctt-cttgaacctctctctgaactcagacctaaaaatcacaacaacaaaaaaaatcatcagaatcaa 9695221  T

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Target: scaffold0405 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0405
Description:

Target: scaffold0405; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 15205 - 15283
Alignment:
Q  1 ttgttgcttggattctcttttcttaaacttctctctgaattcagacctaaaaatcacaaaacaaaaatcatcagaatcaa 80  Q
    |||||||||| ||||||||| ||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  15205 ttgttgcttgaattctcttt-cttgaacctctctctaaattcagacctaaaaatcacaaaacaaaaatcatcagaatcaa 15283  T

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Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 47521667 - 47521591
Alignment:
Q  118 tatggccgattccagtacaggtttcactataaaatttgtatacgatcactctatcagacacaaatcagatcgaaatt 194  Q
    |||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||| ||| |||||    
T  47521667 tatggctgattccagtacaggtttaactataaaatttgtatacggtcactctatcagacacgaatcaaatcaaaatt 47521591  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 194
Target Start/End: Complemental strand, 4092386 - 4092329
Alignment:
Q  135 caggtttcactataaaatttgtatacgatcactctatcagacacaaatcagatcgaaatt 194  Q
    ||||||||||||||||||||||||||| |||  |||||| |||||||||| |||||||||    
T  4092386 caggtttcactataaaatttgtatacggtca--ctatcaaacacaaatcaaatcgaaatt 4092329  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 140 - 194
Target Start/End: Complemental strand, 4436161 - 4436107
Alignment:
Q  140 ttcactataaaatttgtatacgatcactctatcagacacaaatcagatcgaaatt 194  Q
    |||||||||||||||||| ||| ||||||||||||||||||| || ||| |||||    
T  4436161 ttcactataaaatttgtaaacggtcactctatcagacacaaagcaaatcaaaatt 4436107  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 46594677 - 46594731
Alignment:
Q  140 ttcactataaaatttgtatacgatcactctatcagacacaaatcagatcgaaatt 194  Q
    |||||||||||||||||| ||| ||||||||||||||||||| || ||| |||||    
T  46594677 ttcactataaaatttgtaaacggtcactctatcagacacaaagcaaatcaaaatt 46594731  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 26496391 - 26496351
Alignment:
Q  149 aaatttgtatacgatcactctatcagacacaaatcagatcg 189  Q
    ||||||||||||| |||||||||||||||||||||| ||||    
T  26496391 aaatttgtatacggtcactctatcagacacaaatcaaatcg 26496351  T

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