View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8459_low_2 (Length: 599)
Name: NF8459_low_2
Description: NF8459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8459_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 19 - 583
Target Start/End: Original strand, 29281814 - 29282377
Alignment:
| Q |
19 |
tcaaaaagtaagagaaatagtaaggggagggaaaaggttgtcataatctaattttggcaacaaacactgattaaacattaaacaactttaaacactttca |
118 |
Q |
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| T |
29281814 |
tcaaaaagtaagagaaatagtaaggggagggaaaaggttgtcataatctaattttggcaacaaacactgattaagcattaaacaactttaaacactttca |
29281913 |
T |
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| Q |
119 |
caaattcaattgaaaaagaaacatatttttatgaatcatccatgtcattcacctaacaaattttctttatacactttctttttattcaaggtgtctcatt |
218 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29281914 |
caaattcaattgaaaaggaaacatatttttatgaatcatccatgtcattcacctaacaaattttctttatacactttctttttattcaaggtgtctcatt |
29282013 |
T |
|
| Q |
219 |
atacatgaataatacccttgtatatatgactcctcataaatcaatttgtgttcttaagttcaatttggattagttttttactttaaataaatatttaatt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29282014 |
atacatgaataatacccttgtatatatgactcctcataaatcaatttgtgttcttaagttcaatttggattagttttttactttaaataaatatttaatt |
29282113 |
T |
|
| Q |
319 |
cttcatgcatatacgaatttagattgtgtgcggttactatttccagacattcatgcttttaaattgggttgaaatcggaattgtctgatcgtgattcaat |
418 |
Q |
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||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
29282114 |
cttcatgcatatacgaatttagattgtctgcgattactatttccacacattcatgcttttaaattgggtcgaaatcggaattgtctaatcgtgattcaat |
29282213 |
T |
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| Q |
419 |
aactccaaaatcttgttacccgctcaaatgcgtggaaatcatgccccgcaagacaatctaaatttatgtatatacatatgtgaagtagacaaaagagcac |
518 |
Q |
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|||||||||||||||||| || ||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29282214 |
aactccaaaatcttgttaaccactcaaatgcgtggaaatcatgccccacaaggcaatctaaa-ttatgtatatacatatgtgaagtagacaaaagagcac |
29282312 |
T |
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| Q |
519 |
ctgaataatatagaaaggttttgaactgtggccgcggttgtggatacgccacaaaccgttatatt |
583 |
Q |
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| T |
29282313 |
ctgaataatatagaaaggttttgaactgtggccgcagttgtggatacgccacaaaccgttatatt |
29282377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 117 - 200
Target Start/End: Original strand, 3508299 - 3508382
Alignment:
| Q |
117 |
cacaaattcaattgaaaaagaaacatatttttatgaatcatccatgtcattcacctaacaaattttctttatacactttctttt |
200 |
Q |
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| T |
3508299 |
cacaaatacaattgaaaaagaaacatagttttatgaatcatgcattccattcatctaacaaattttatttttgcactttctttt |
3508382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 3508482 - 3508529
Alignment:
| Q |
133 |
aaagaaacatatttttatgaatcatccatgtcattcacctaacaaatt |
180 |
Q |
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||||||||||| | || |||||||||||||||||||||||| |||||| |
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| T |
3508482 |
aaagaaacatagtgttttgaatcatccatgtcattcacctatcaaatt |
3508529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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