View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8459_low_3 (Length: 492)
Name: NF8459_low_3
Description: NF8459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8459_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 15 - 481
Target Start/End: Complemental strand, 20665138 - 20664674
Alignment:
| Q |
15 |
tgtcagatcaagaaagccttgagaggtattagggtaagaacatctcacggaggtaacataaggagttacagggtgaccggtgtctcaaaagagcccctca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
20665138 |
tgtcagatcaagaaagccttgagaggtattagggtaagaacatctcacggaggtaacataaggagttacaaggtgaccggtgtctcaaaagagcccctca |
20665039 |
T |
|
| Q |
115 |
gagatctaacgtgagcaacnnnnnnnnnnnnnnnnnncccttaccattttagtgatccctttgaggttggagtaaattgcgcttaatctgtgatacttac |
214 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
20665038 |
gagatctaatgtgagcaactttttttttttttttt--cccttaccattttagtgatccctttaaggttggagtaaattgcgcgtaatctgtgatacttac |
20664941 |
T |
|
| Q |
215 |
aaaggttactgatctgcttgggggcaagttgtatagtccatgactaacctttatttttacaactttaggcttgatttcactcttctaatttgttatccat |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20664940 |
aaaggttactgatctgcttgggggcaagttgtatagtccatgactaacctttatttttacaactttaggcttgatttcactcttctaatttgttatccat |
20664841 |
T |
|
| Q |
315 |
ttaggttcaagcttgatgaccaagtaactcggnnnnnnnttgctgattatttctatgagaaatatgaaattgtgttacagtatccacttcttcctgctct |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20664840 |
ttaggttcaagcttgatgaccaagtaactcggaaaaaaatatctgattatttctatgagaaatatgaaattgtgttacagtatccacttcttcctgctct |
20664741 |
T |
|
| Q |
415 |
ccaagctggaagtgacacgaggcctatgtttattccaatggaggtttttctcttcactactctctgt |
481 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20664740 |
ccaagctggaagtgacacgaggcctatgtttattccaatggaggtttttctcttcactactctctgt |
20664674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 258 - 461
Target Start/End: Complemental strand, 20689264 - 20689051
Alignment:
| Q |
258 |
ctaacctttatttttacaactttaggcttgatttcactcttc----------taatttgttatccatttaggttcaagcttgatgaccaagtaactcggn |
347 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||| ||||||||| ||||||||||||| || ||||||| |||||||||| ||||||||||| |
|
|
| T |
20689264 |
ctaagctttattttaacaactttaggcttgatatcactcttcattttgtttgtaatttgttatccgttaaggttcatgcttgatgacaaagtaactcgga |
20689165 |
T |
|
| Q |
348 |
nnnnnnttgctgattatttctatgagaaatatgaaattgtgttacagtatccacttcttcctgctctccaagctggaagtgacacgaggcctatgtttat |
447 |
Q |
| |
|
||| |||| ||||| |||||| ||| | | ||||||| || ||||||||||||| ||||||||||| |||||||||||||||||||||| | | |
|
|
| T |
20689164 |
aaaaagttgttgatcatttccatgagagatacggtactgtgttaaagcatccacttcttcccgctctccaagccggaagtgacacgaggcctatgtattt |
20689065 |
T |
|
| Q |
448 |
tccaatggaggttt |
461 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
20689064 |
tccaatggaggttt |
20689051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 3 - 129
Target Start/End: Complemental strand, 20689499 - 20689373
Alignment:
| Q |
3 |
ttttttactctgtgtcagatcaagaaagccttgagaggtattagggtaagaacatctcacggaggtaacataaggagttacagggtgaccggtgtctcaa |
102 |
Q |
| |
|
||||||||| ||| |||||||| |||||||||||||||| ||| ||||||| |||| ||||| | |||||||||||||| ||||||||||||||||| |
|
|
| T |
20689499 |
ttttttactttgtttcagatcacgaaagccttgagaggtcttaaggtaagattctctcgcggagagatcataaggagttacaaggtgaccggtgtctcaa |
20689400 |
T |
|
| Q |
103 |
aagagcccctcagagatctaacgtgag |
129 |
Q |
| |
|
||||||| |||||||| |||||||||| |
|
|
| T |
20689399 |
aagagccactcagagacctaacgtgag |
20689373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University