View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8459_low_6 (Length: 409)
Name: NF8459_low_6
Description: NF8459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8459_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 28 - 390
Target Start/End: Complemental strand, 53274635 - 53274286
Alignment:
| Q |
28 |
aataaattaaatagaaaacttaaaactcataaacttaaatttgttttagatttcactcacctcaccgctcttagattgtccatgtgaaaatgtattaatg |
127 |
Q |
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| T |
53274635 |
aataaattaaatagaaaacttaaaactcataaacttaaatttgttttagatttcactcacc-----gctcttagattgtccatgtgaaaatgtattaatg |
53274541 |
T |
|
| Q |
128 |
taatacgaatcataactttagaatgatcgcaattgcggtcgcaaccatttgatttaagatgtctatgtgttgaagatgtaaaagaacctggttatacacg |
227 |
Q |
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| T |
53274540 |
taatacgaatcataattttagaatgatcgcaattgcggtcgcaaccattt-----aagatgtctatgtgttgaagatgtaaaagaacctggttatacacg |
53274446 |
T |
|
| Q |
228 |
aaggaatatattcgtaattaagaaatatggctagtatatgctatctcatgaagataatataatatgtacctatatagtctgatggaacttttccattgca |
327 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53274445 |
aaggaatatattcgtaattaagacatatggctagtatatgctatct---gaagataatataatatgtacctatatagtctgatggaacttttccattgca |
53274349 |
T |
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| Q |
328 |
aaaccgaccagtagggatgcctccattgaaatctttaccatatggaagaaaattgcacctagc |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53274348 |
aaaccgaccagtagggatgcctccattgaaatctttaccatatggaagaaaattgcacctagc |
53274286 |
T |
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