View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8459_low_8 (Length: 291)
Name: NF8459_low_8
Description: NF8459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8459_low_8 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 7081900 - 7081610
Alignment:
| Q |
1 |
cctacaagctgttcaatgcacagttgtttcagcagttggaaactcttactttgatgcctatgttttatcagaatcaagtctctttgtatatccaacaaag |
100 |
Q |
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| T |
7081900 |
cctacaagctgttcaatgcacagttgtttcagcagttggaaactcttactttgatgcctatgttttatcagaatcaagtctctttgtatatccaacaaag |
7081801 |
T |
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| Q |
101 |
atcataatcaaaacttgtggaactacacaacttctcaaatccatcattcccttaatctactttgcaaacactcaccttaactttacactctcctcagttt |
200 |
Q |
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| T |
7081800 |
atcataatcaaaacttgtggaactacacaacttctcaaatccatcattcccttaatctactttgcaaacactcaccttaactttacactctcctcagttt |
7081701 |
T |
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| Q |
201 |
cttacacaagaggtagcttcatcttcccaaattcacaacctttccctcacacttccttcaatgaagaagtttcttacttagaaaacactat |
291 |
Q |
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| T |
7081700 |
cttacacaagaggtagcttcatcttcccaaattcacaacctttccctcacacttccttcaatgaagaagtttcttacttagaaaacactat |
7081610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 6 - 169
Target Start/End: Original strand, 49019907 - 49020070
Alignment:
| Q |
6 |
aagctgttcaatgcacagttgtttcagcagttggaaactcttactttgatgcctatgttttatcagaatcaagtctctttgtatatccaacaaagatcat |
105 |
Q |
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| T |
49019907 |
aagctgttcaatgcacagtggtttcagcagttggtaactcttactttgatgcatacgttttatcagaatcaagcctctttgtttatccaactaagatcat |
49020006 |
T |
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| Q |
106 |
aatcaaaacttgtggaactacacaacttctcaaatccatcattcccttaatctactttgcaaac |
169 |
Q |
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| T |
49020007 |
aatcaaaacatgtggaacaacccaacttctcaaatccattcttccattaattcactatgcaaac |
49020070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 291
Target Start/End: Original strand, 49020101 - 49020189
Alignment:
| Q |
203 |
tacacaagaggtagcttcatcttcccaaattcacaacctttccctcacacttccttcaatgaagaagtttcttacttagaaaacactat |
291 |
Q |
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| T |
49020101 |
tacacaagaggaagcttcatcttcccaaatgcacaacctttcccttacacaagcttcaatgacgaagtaacctatttagaagacactat |
49020189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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