View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8460_high_3 (Length: 418)
Name: NF8460_high_3
Description: NF8460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8460_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 38280104 - 38279722
Alignment:
| Q |
1 |
ctgtggtgcgtacttggtgaaaagagaaaagtctttcaagatgcatcaacaagtatacatcaaaatagtcaatttttcaaactaaatgataagagaatga |
100 |
Q |
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| T |
38280104 |
ctgtggtacgtacttggtgaaaagagaaaagtctttcaagatgcatcaacaagtatacatcaaaatagtcaatttttcaaactaaatgataagagaatga |
38280005 |
T |
|
| Q |
101 |
ttgtggaaatagttactacaagacatgtatgtatatatggcacttgatgttggcttttaattagattggaattcttaattagaccccatatataacgtga |
200 |
Q |
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| T |
38280004 |
ttgtggaaatagttactacaagacat----gtatatatggcacttgatgttggcttttaattagattggaattcttaattagacccc----ataacgtga |
38279913 |
T |
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| Q |
201 |
attattcgtactagtgcatatgttattttttgtacggcttttaaaaatgagtaaagtagtaaatttgaggcacaaggggatatatgctttcactttgcaa |
300 |
Q |
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| T |
38279912 |
attattcgtaccagtgcatatgttattttttgtacggcttttaaaaa------------------tgaggcacaaggggatatatgctttcactttgcaa |
38279831 |
T |
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| Q |
301 |
atttg-ctttta-tgttgctttgtctcattgagattcttttatcacatacataattgctggacagtatcatctcgaggcatctcaatcctcagtcccgat |
398 |
Q |
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||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38279830 |
atttgtcttttattgttgctttgtctcattgagattcttttatcacatacataattgctggacagtatcatctcgaggcatctcaatcctcagtcccgat |
38279731 |
T |
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