View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8460_high_6 (Length: 303)
Name: NF8460_high_6
Description: NF8460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8460_high_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 1323545 - 1323819
Alignment:
| Q |
1 |
agggctatgatgaagctattgaagaactccaaaaattgttgaggtaaatctcaaacaccttctcctattagaattatataaacaatattaattcattcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1323545 |
agggctatgatgaagctattgaagaactccaaaaattgttgaggtaaatctcaaacaacttctcctattagaattatatacacaatattaattcattcat |
1323644 |
T |
|
| Q |
101 |
cgttaacgtaaatattttttacaccgtcagtcgttcataattgtcaaatcattaaaataacctaactttaacaataattatttctaaagtctcatatacg |
200 |
Q |
| |
|
| ||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||| ||| ||||||||||||||| ||||||||||| |
|
|
| T |
1323645 |
c-----------tattttttacaccgtcaatcgttcataattatcagatcattaaaataacctaacttcaacgataattatttctaaaatctcatatacg |
1323733 |
T |
|
| Q |
201 |
caatatcttatcttatcttataatctttcaaatatagggagaagactgaattgaaagccacagcagctgaaaaggttgcgcaaatt |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1323734 |
caatatcttatcttatcttataatctttcaaatatagggagaagactgaattgaaagccacagcagctgaaaaggttgagcaaatt |
1323819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University