View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8460_high_8 (Length: 270)
Name: NF8460_high_8
Description: NF8460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8460_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 42 - 252
Target Start/End: Original strand, 34381333 - 34381543
Alignment:
| Q |
42 |
taaaaaatgggtttactaatgaacatgagagtgacaattacaggactttataggtacaaagtaggcgatgtattgaaagtgacaggattcaagaacaagg |
141 |
Q |
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| T |
34381333 |
taaaaaatgggtttactaatgaacatgagtgtgacaattacaggactttataggtacaaagtaggcgatgtattgaaagtgacaggattcaagaacaagg |
34381432 |
T |
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| Q |
142 |
caccacaattcagctttgtttgcagaaaaaacgttgtcttaagcatagaatcagacaaaacagatgaagttgagttacaaaatgcaatgaaaaatgcagt |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34381433 |
caccacaattcagctttgtttgcagaaaaaacgttgtcttaagcatagaatcagacaaaacagatgaagttgagttacaaaatgcaatgaaaaatgcagt |
34381532 |
T |
|
| Q |
242 |
gacacatttag |
252 |
Q |
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||||||||||| |
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| T |
34381533 |
gacacatttag |
34381543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 126 - 253
Target Start/End: Complemental strand, 23955321 - 23955194
Alignment:
| Q |
126 |
ggattcaagaacaaggcaccacaattcagctttgtttgcagaaaaaacgttgtcttaagcatagaatcagacaaaacagatgaagttgagttacaaaatg |
225 |
Q |
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|||||||||||||| ||||||||||||| |||||| ||| ||||||| || || || ||||| || ||||||||||| |||||||||||| | ||||||| |
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| T |
23955321 |
ggattcaagaacaaagcaccacaattcaactttgtgtgccgaaaaaatgtggtattgagcattgattcagacaaaactgatgaagttgagcttcaaaatg |
23955222 |
T |
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| Q |
226 |
caatgaaaaatgcagtgacacatttagt |
253 |
Q |
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| T |
23955221 |
caatggcaaatgctataacacatttagt |
23955194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 227
Target Start/End: Complemental strand, 15836295 - 15836192
Alignment:
| Q |
124 |
caggattcaagaacaaggcaccacaattcagctttgtttgcagaaaaaacgttgtcttaagcatagaatcagacaaaacagatgaagttgagttacaaaa |
223 |
Q |
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|||||||||||||||||||||| ||||||| ||| | ||| |||||||||| || |||||||| || ||||| ||||| |||||||||||| |||||| |
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| T |
15836295 |
caggattcaagaacaaggcacctcaattcaacttcatatgccgaaaaaacgtagttttaagcatcgattcagataaaaccgatgaagttgagctacaaac |
15836196 |
T |
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| Q |
224 |
tgca |
227 |
Q |
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|||| |
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| T |
15836195 |
tgca |
15836192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 9505170 - 9505123
Alignment:
| Q |
1 |
ctcatatcaataatcttgaaaaattgtcacgatatactttataaaaaa |
48 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
9505170 |
ctcatatcaataatcttgaaaaaatgtcacgatatactttaaaaaaaa |
9505123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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