View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8460_low_1 (Length: 439)
Name: NF8460_low_1
Description: NF8460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8460_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 30276324 - 30276029
Alignment:
| Q |
1 |
acaagtcacgtaaaagatttcaaagtatctcaaagaagatttgacaatataatcatttgcatccagttgacaaaactagtagggacgaatcaaacataga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| || | |
|
|
| T |
30276324 |
acaagtcacgtaaaagatttcaaagtatttcgaagaagatttgacaatataatcatttgcatccagttgataaaactggtagggacgaatcaaacctaaa |
30276225 |
T |
|
| Q |
101 |
gtttagtttgtctcacacacgttttagaattatttgtgcaactttcatcatcttcttcttgttcaagttatttatagtgtagacctcaacacaagatcaa |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30276224 |
gtttagtgtgtctcacacacgttttagaattatttgtgcaactttcatcatcttcttcttgttcaagttatttatagtgtagacctcaacacaagatcaa |
30276125 |
T |
|
| Q |
201 |
acatacatatagtttgtaagaaaataacattttatgatatgcttaacttgtattagtagaaaatcggtaagtgtaatagctaccaagaatgaacat |
296 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30276124 |
acatatatatagtttgtaagaaaataacattttatgatatgcttaacttgtattagtagaaaatcggtaagtgtaatagctaccaagaatgaacat |
30276029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 417
Target Start/End: Complemental strand, 30275983 - 30275913
Alignment:
| Q |
346 |
ctctttagtgtatttcatcatccttgtagataccacnnnnnnnnnngtatatttcgtcaactatgttattgg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30275983 |
ctctttagtgtatttcatcatccttgtagataccac-aaaaaaaaagtatatttcgtcaactatgttattgg |
30275913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University