View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8460_low_14 (Length: 242)
Name: NF8460_low_14
Description: NF8460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8460_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 15866070 - 15865861
Alignment:
| Q |
17 |
tggtgttattaggcaggtatcctgaatggcaagcacgtgcaagggaggaagttttgcaagtttttgggaacaaaaatccaaacaacgaaggattaagtca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||| ||| |
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| T |
15866070 |
tggtgttattaggcaggtatcctgaatggcaagcacgtgcaaggcaggaagttttgcaagtttttgggaaccaaaatccaaacatcgaaggattaaatca |
15865971 |
T |
|
| Q |
117 |
acttaaaattgtatgtattgttcaaatttcattttgatgattattaatacttaatcctttttggtactatctaataattgtttttgtttttataggttac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15865970 |
acttaaaattgtatgtattgttcaaatttcattttgatgattattaatacttaatcctttttggtactatctaataattgtttttgtttttataggttac |
15865871 |
T |
|
| Q |
217 |
catgattttg |
226 |
Q |
| |
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|||||||||| |
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| T |
15865870 |
catgattttg |
15865861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 15859364 - 15859234
Alignment:
| Q |
17 |
tggtgttattaggcaggtatcctgaatggcaagcacgtgcaagggaggaagttttgcaagtttttgggaacaaaaatccaaacaacgaaggattaagtca |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
15859364 |
tggtgttattaggcaggtatcctgaatggcaagcacgtgcaagggaggaagttttgcaagtttttgggaaccaaaatcctaacaacgaaggattaagtca |
15859265 |
T |
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| Q |
117 |
acttaaaattgtatgtattgttcaaatttca |
147 |
Q |
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| T |
15859264 |
acttaaaattgtatgtattgttcaaatttca |
15859234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 15845170 - 15845052
Alignment:
| Q |
17 |
tggtgttattaggcaggtatcctgaatggcaagcacgtgcaagggaggaagttttgcaagtttttgggaacaaaaatccaaacaacgaaggattaagtca |
116 |
Q |
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|
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
15845170 |
tggtgttattaggcaggtatcctgaatggcaagaacgtgcaaggcaggaagttttgcaagtttttgggaaccaaaatccaaacagcgaaggattaagtca |
15845071 |
T |
|
| Q |
117 |
acttaaaattgtatgtatt |
135 |
Q |
| |
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|||||||| |||||||||| |
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| T |
15845070 |
acttaaaactgtatgtatt |
15845052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 15852377 - 15852260
Alignment:
| Q |
17 |
tggtgttattaggcaggtatcctgaatggcaagcacgtgcaagggaggaagttttgcaagtttttgggaacaaaaatccaaacaacgaaggattaagtca |
116 |
Q |
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|
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||| ||||||| |
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| T |
15852377 |
tggtgttattaggcaggtatcctgaatggcaagaacgtgcaaggcaggaagttttgcaagtttttgggaaccaaaatccaaacttcgaaggactaagtca |
15852278 |
T |
|
| Q |
117 |
acttaaaattgtatgtat |
134 |
Q |
| |
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||||||||||||| |||| |
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| T |
15852277 |
acttaaaattgtacgtat |
15852260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 141 - 226
Target Start/End: Complemental strand, 15858878 - 15858793
Alignment:
| Q |
141 |
aatttcattttgatgattattaatacttaatcctttttggtactatctaataattgtttttgtttttataggttaccatgattttg |
226 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||| |
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| T |
15858878 |
aatttcattttgatgattattaatacataatcctttttggtactatctgataattgtttttgtttctgtaggttaccatgattttg |
15858793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 226
Target Start/End: Complemental strand, 15844742 - 15844658
Alignment:
| Q |
143 |
tttcattttgatgattattaatacttaatcctttttggtactatctaataattgtttttgttt--ttataggttaccatgattttg |
226 |
Q |
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|||||||||||||||||||||||| ||||| |||| |||||||||| |||||| |||||||| |||||||||||||||||||| |
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| T |
15844742 |
tttcattttgatgattattaatacataatcattttcggtactatctgataatt-cttttgtttccatataggttaccatgattttg |
15844658 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 125
Target Start/End: Original strand, 30403949 - 30404040
Alignment:
| Q |
34 |
tatcctgaatggcaagcacgtgcaagggaggaagttttgcaagtttttgggaacaaaaatccaaacaacgaaggattaagtcaacttaaaat |
125 |
Q |
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|||||||| ||||||||||| || || ||||||||||||||||||||||| |||||| || |||| ||| ||| |||||| |||||||| |
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| T |
30403949 |
tatcctgattggcaagcacgagctagagaggaagttttgcaagtttttggcgacaaaatgcctaacagcgatggaataagtcgccttaaaat |
30404040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 30437243 - 30437301
Alignment:
| Q |
31 |
aggtatcctgaatggcaagcacgtgcaagggaggaagttttgcaagtttttgggaacaa |
89 |
Q |
| |
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||||| ||||| |||||||||||||||||||||||||| || ||||| ||||| ||||| |
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| T |
30437243 |
aggtaccctgattggcaagcacgtgcaagggaggaagtattacaagtatttggcaacaa |
30437301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 30476016 - 30476062
Alignment:
| Q |
31 |
aggtatcctgaatggcaagcacgtgcaagggaggaagttttgcaagt |
77 |
Q |
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||||||||||| |||||||| ||||||||||||||||| |||||||| |
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| T |
30476016 |
aggtatcctgattggcaagctcgtgcaagggaggaagtattgcaagt |
30476062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 135
Target Start/End: Complemental strand, 8379631 - 8379527
Alignment:
| Q |
31 |
aggtatcctgaatggcaagcacgtgcaagggaggaagttttgcaagtttttgggaacaaaaatccaaacaacgaaggattaagtcaacttaaaattgtat |
130 |
Q |
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||||| ||||| ||||||| |||||| ||||||||||| || ||| | ||||| |||||||| ||| || | |||||| ||| | ||||||| |||||| |
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| T |
8379631 |
aggtaccctgattggcaagaacgtgctagggaggaagtattacaaatatttggcaacaaaaaaccagactatgaaggactaaataaacttaagattgtaa |
8379532 |
T |
|
| Q |
131 |
gtatt |
135 |
Q |
| |
|
||||| |
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|
| T |
8379531 |
gtatt |
8379527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 30424955 - 30425013
Alignment:
| Q |
31 |
aggtatcctgaatggcaagcacgtgcaagggaggaagttttgcaagtttttgggaacaa |
89 |
Q |
| |
|
||||| ||||| ||||||| |||||||||||| ||||| || ||||||||||| ||||| |
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|
| T |
30424955 |
aggtaccctgattggcaagaacgtgcaagggaagaagtattacaagtttttggcaacaa |
30425013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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