View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8460_low_16 (Length: 224)
Name: NF8460_low_16
Description: NF8460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8460_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 54384350 - 54384139
Alignment:
| Q |
1 |
tcagtactaaatgcatttcctgacaatttaattctaatgaaatgatagtaatatttgaaagatcataattaatattaatgttagttacta---tacaatg |
97 |
Q |
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| T |
54384350 |
tcagtactaaatgcatttcctgacaatttaattctaatgaaatgatagtaatatttgaaagatcataattaatattaatgttagttactactatacaatg |
54384251 |
T |
|
| Q |
98 |
tgaaccgatgcaggtcagatgaagcaagacaaccactgtcaaggaaggtaccaatagcatctagcaaaatcaatccatataggatggtgatcgtggcacg |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54384250 |
tgaaccgatgcaggtcagatgaagcaagacaaccactgtcaaggaaggtaccaatagcatctagcaaaatcaatccatataggatggtgatcgtggcacg |
54384151 |
T |
|
| Q |
198 |
gcttgttattct |
209 |
Q |
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|||||||||||| |
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| T |
54384150 |
gcttgttattct |
54384139 |
T |
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