View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8460_low_2 (Length: 436)
Name: NF8460_low_2
Description: NF8460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8460_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 255 - 430
Target Start/End: Complemental strand, 9504941 - 9504766
Alignment:
| Q |
255 |
gcgtgttagagattgtatttctcacactaattaattatcattactatgtacttgataatatcttggcacagagggtgcaccaccttgatttaaaactaat |
354 |
Q |
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| T |
9504941 |
gcgtgttagagattgtatttctcacactaattaattatcattactatgtacttgataatatcttggcacagagggtgcacccccttgatttaaaactaat |
9504842 |
T |
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| Q |
355 |
aaagtcatcaattgtcaactagattttaatgttcctcttaggtcaacaactatgacacttgtattgtctctgctac |
430 |
Q |
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| T |
9504841 |
aaagtcatcaattgtcaactagattttaatgttcctcttaggtcaacaactatgacacttgtattgtctctgctac |
9504766 |
T |
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Target: chr1; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 9505206 - 9504963
Alignment:
| Q |
20 |
tatatactatcattcagttttaattctcacacaattctcatatcaataatcttgaaaaaatgtcacgatatactttnnnnnnnnnnnnnn--cactcttt |
117 |
Q |
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| T |
9505206 |
tatatactatcattcaattttaattctcacacaattctcatatcaataatcttgaaaaaatgtcacgatatactttaaaaaaaaaaaaaaaacactcttt |
9505107 |
T |
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| Q |
118 |
caaacatacacgataatattcgataaccaccaactcatgtgtttgtcattgtttctaatataatgaaatttacttcgagcgagatcaaactcacttaaat |
217 |
Q |
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| T |
9505106 |
caaacatacacgataatattcaataaccaccaactcatatgtttgtcattgtttctaatataatgaaatttacttcgagcgagatcaaactcacttaaat |
9505007 |
T |
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| Q |
218 |
ttcaattaatcaataacattgaacgtatcttaaaagggcgtgtt |
261 |
Q |
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| T |
9505006 |
ttcaattaatcgataacattgaacatatcttaaaagagcgtgtt |
9504963 |
T |
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