View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8460_low_9 (Length: 272)
Name: NF8460_low_9
Description: NF8460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8460_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 18698336 - 18698113
Alignment:
| Q |
18 |
aagaattggggtagcacacttggaaagatggttaagtctggatttaggttgtttgagcatgttatttgaggaatacacggggttgttgatcaatcttggt |
117 |
Q |
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| T |
18698336 |
aagaattggggtagcacacttggaaagatggttaagtctggatttaagttgtttgagcatgttatttgaggaatgcacgggtttgttgatcaatcttggt |
18698237 |
T |
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| Q |
118 |
tctgcagaattattattcccaacatggaaataattagttattttgtttgcaccattatgaaatacctaggataagttgtttacataagcttttgtcgttg |
217 |
Q |
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| T |
18698236 |
tctgcagaattattattcacaacatggaaataattagttgttttgttttcaccattatgaaatacataggataagttgtttacgtaagcttttgtcgtgg |
18698137 |
T |
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| Q |
218 |
tttaggtaggtacattttatagttgtt |
244 |
Q |
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| T |
18698136 |
tttaggt---tacattttatagttgtt |
18698113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 40161330 - 40161168
Alignment:
| Q |
42 |
aagatggttaagtctggatttaggttgtttgagcatgttatttgaggaatacacggggttgttgatcaatcttggttctgcagaattattattcccaaca |
141 |
Q |
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| T |
40161330 |
aagatggttgattcttgatttaagtggtttgggcatgttatttgaggaatacatttgattgttgttcaatcatggttctgctgaatcattattcccaaca |
40161231 |
T |
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| Q |
142 |
tggaaataattagttattttgtttgcaccattatgaaatacctaggataagttgtttacataa |
204 |
Q |
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| T |
40161230 |
tggaaatagtctgttattttatttgcacctatgtcagaggcctaggataagttgtttacataa |
40161168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 59 - 244
Target Start/End: Complemental strand, 33946908 - 33946727
Alignment:
| Q |
59 |
atttaggttgtttgagcatgttatttgaggaatacacggggttgttgatcaatcttggttctgcagaattattattcccaacatgg-aaataattagtta |
157 |
Q |
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| T |
33946908 |
attttggtggttttagcatgttatttgaggaatacattggtttgttg-tcaatcttggtacgtcagaatcattattcccaacatggaaaataatgagtta |
33946810 |
T |
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| Q |
158 |
ttttgtttgcaccattatgaaatacctaggataagttgtttacataagcttttgtcgttgtttaggtaggtacattttatagttgtt |
244 |
Q |
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| T |
33946809 |
ttttgtttgtaccattat----cacctagaatatgttgtttacataagcacttgttgtggtttaggtggggagattttatagctgtt |
33946727 |
T |
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