View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8461_high_1 (Length: 843)
Name: NF8461_high_1
Description: NF8461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8461_high_1 |
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| [»] scaffold1384 (1 HSPs) |
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| [»] scaffold1183 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 819; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 819; E-Value: 0
Query Start/End: Original strand, 1 - 839
Target Start/End: Original strand, 52806521 - 52807359
Alignment:
| Q |
1 |
taaggttaatgttttctctatgattctcactagttgaaggcgaacatggagatgaaaacacaccaccaccagaactattataacatttaaaaacagaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52806521 |
taaggttaatgttttctctatgattctcactagttgaaggcgaacatggagatgaaaacacaccaccaccagaactattataacatttaaaaacagaatt |
52806620 |
T |
|
| Q |
101 |
agaaggtgagaaagagtcttctaaattgttcttaacaagagtactagagaatccagcttctctcataaccctactaacactaggatcatcaagtatagat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52806621 |
agaaggtgagaaagagtcttctaaattgttcttaacaagagtactagagaatccagcttctctcataaccctactaacactaggatcatcaagtatagat |
52806720 |
T |
|
| Q |
201 |
ataataagctgttcaagctcaactttgacagtaagaacagtttgctgttgttgctgctgctgttctatggaacctcgtctttgatgagcttgtgctcttt |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52806721 |
ataataagctgttcaagctcaactttgacagtaagaacagtttgctggtgttgctgctgctgttctatggaacctcgtctttgatgagcttgtgctcttt |
52806820 |
T |
|
| Q |
301 |
tcaatgcagcaatgagagcattggaaagtgaaggctgagagtgaatcaaaggagaaggtgttgttggtaacctattaagagctacattgaaacaaagctc |
400 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52806821 |
tcaatgcagcaataagagcattggaaagtgaaggctgagagtgaatcaaaggagaaggtgttgttggtaacctattaagagctacattgaaacaaagctc |
52806920 |
T |
|
| Q |
401 |
aagagctctagattgaagtggatgttgtgaagtttgatggtgaggctgatgagacttaagacaagctcttttgaaggaacttagtcttaaggtaagtaaa |
500 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
52806921 |
aagagccctagattgaagtggatgttgtgaagtttgatggtgaggctgatgagacttaagacaagcccttttgaaggaacttagtcttaaggtaagtaaa |
52807020 |
T |
|
| Q |
501 |
gtgatggctacatgtagaggagtgacttgtggatgacctcgccttctagccaacacaagagaatgcttcaaaactgaagcagcctctgctgtgagggtct |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52807021 |
gtgatggctacatgtagaggagtgacttgtggatgacctcgccttctagccaacacaagagaatgcttcaaaactgaagcagcctctgctgtgagggtct |
52807120 |
T |
|
| Q |
601 |
gctgcaatgcacaacctcctgagcgcatcacttgatatatacacaccccctatacacttccctctttgtctttggaagctagtttagtttagttactctc |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52807121 |
gctgcaatgcacaacctcctgagcgcatcacttgatatatacacaccccctatacacttccctctttgtctttggaagctagtttagtttagttactctc |
52807220 |
T |
|
| Q |
701 |
ttttgtttttctatcaaagaaacgtggaactagcttaaagagtttcaatgagtgagagagaatgaaagagctctagtaaacaggctttagaaataacaat |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52807221 |
ttttgtttttctatcaaagaaacgtggaactagcttaaagagtttcaatgagtgagagagaatgaaagagctctagtaaacaggctttagaaataacaat |
52807320 |
T |
|
| Q |
801 |
aactatgcctcactgctttctttatagttcttctcactc |
839 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |
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| T |
52807321 |
aactatgcctcactgctttctttatagttcttgtcactc |
52807359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 155 - 237
Target Start/End: Complemental strand, 53818251 - 53818169
Alignment:
| Q |
155 |
agcttctctcataaccctactaacactaggatcatcaagtatagatataataagctgttcaagctcaactttgacagtaagaa |
237 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||| || ||||| || || ||||| | ||||||||||||| ||||| |
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| T |
53818251 |
agcttctctcatgaccctactaacactaggatcatcaagaattgatatgatgagttgttccaattcaactttgacagcaagaa |
53818169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 132 - 216
Target Start/End: Original strand, 40588529 - 40588613
Alignment:
| Q |
132 |
ttaacaagagtactagagaatccagcttctctcataaccctactaacactaggatcatcaagtatagatataataagctgttcaa |
216 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| || || |||||||||| |
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| T |
40588529 |
ttaacaagagtgctagagaaaccagcttctctcataactctactaacacttggatcatcaagtatagagattatgagctgttcaa |
40588613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 190
Target Start/End: Complemental strand, 25118339 - 25118305
Alignment:
| Q |
156 |
gcttctctcataaccctactaacactaggatcatc |
190 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
25118339 |
gcttctctcataaccctactaacactaggatcatc |
25118305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 112 - 424
Target Start/End: Complemental strand, 16611558 - 16611234
Alignment:
| Q |
112 |
aagagtcttctaaattgttcttaacaagagtactagagaatccagcttctctcataaccctactaacactaggatcatcaagtatagatataataagctg |
211 |
Q |
| |
|
|||||| ||| |||||||| |||||| || |||||| || ||||||||||||||||| ||||||||| ||| |||||||| || || | ||||||||| |
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| T |
16611558 |
aagagttttccaaattgtttttaacagaaggactagaaaaaccagcttctctcataactctactaacagaagggtcatcaagaatggaaagaataagctg |
16611459 |
T |
|
| Q |
212 |
ttcaagctcaactttgacagtaagaacagtttgctgttgttgctgctg---ctgttctatggaacctcgtctttgatgagcttgtgctcttttcaatgca |
308 |
Q |
| |
|
||||| |||||||| ||| | | || | |||||| || ||||| || || || || | || | ||||||||||||||| |||||||| | ||| |
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| T |
16611458 |
atcaagttcaactttaacactcaaaagtggttgctgctgctgctgttggttttgctcaatacacccccttctttgatgagcttgagctcttttaagagca |
16611359 |
T |
|
| Q |
309 |
gcaatgagagcattggaaagtgaag------gctgagagtgaatcaaaggagaag--gt-gttgttggtaacctattaagagctacattgaaacaaagct |
399 |
Q |
| |
|
|||||||| ||||| |||||||||| |||| | |||| |||||| |||| || || ||||| | ||||||||||| |||||||| ||||| | |
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| T |
16611358 |
gcaatgagtgcattagaaagtgaaggaacatgctgtggttgaagcaaaggtgaagtagtagtagttggaagtctattaagagcaacattgaagcaaagtt |
16611259 |
T |
|
| Q |
400 |
caagagctctagattgaagtggatg |
424 |
Q |
| |
|
||||||||||| ||||||| ||||| |
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|
| T |
16611258 |
caagagctctacattgaagaggatg |
16611234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1384 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1384
Description:
Target: scaffold1384; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 216
Target Start/End: Original strand, 682 - 766
Alignment:
| Q |
132 |
ttaacaagagtactagagaatccagcttctctcataaccctactaacactaggatcatcaagtatagatataataagctgttcaa |
216 |
Q |
| |
|
|||||||| |||| |||||| ||||||||||||||||| ||||||| || ||| |||||| | |||||||| || || ||||||| |
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|
| T |
682 |
ttaacaagtgtaccagagaaaccagcttctctcataactctactaatacaagggtcatcaggaatagatattattagttgttcaa |
766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1183 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1183
Description:
Target: scaffold1183; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 199
Target Start/End: Complemental strand, 1003 - 936
Alignment:
| Q |
132 |
ttaacaagagtactagagaatccagcttctctcataaccctactaacactaggatcatcaagtataga |
199 |
Q |
| |
|
|||||||| ||||| ||||| ||||||||||||||||| ||||||| || ||| |||| ||| ||||| |
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|
| T |
1003 |
ttaacaagtgtactcgagaaaccagcttctctcataactctactaatacaagggtcattaagaataga |
936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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