View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8461_high_4 (Length: 253)
Name: NF8461_high_4
Description: NF8461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8461_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 11 - 211
Target Start/End: Complemental strand, 25362840 - 25362650
Alignment:
| Q |
11 |
ttggtgttatgttaagattgattttttggggttaaattgctagtatgatttggtattgtcttgagtgtgaaaaatggtgtggaagtcaacaaaaaatgtt |
110 |
Q |
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| T |
25362840 |
ttggtgttatgttaagattgattttttggggttaaattgct----------ggtattgtcttgagtgtgaaaaatggtgtggaagtcaacaaaatatgtt |
25362751 |
T |
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| Q |
111 |
cacactaggatgatttgttcctgttctcctccttttcataaatcaaactaaagtttatatcatgaaatttatatattaaaagtcactataatgtacaatt |
210 |
Q |
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| T |
25362750 |
tacactaggatgatttgttcatgttctcctccttttcataaatcaaactaaagtttatatcatgaaatttatatattaaaagtaactataatgtacaatt |
25362651 |
T |
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