View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8461_high_9 (Length: 241)
Name: NF8461_high_9
Description: NF8461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8461_high_9 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 29 - 241
Target Start/End: Original strand, 30830906 - 30831109
Alignment:
| Q |
29 |
aaatgttagatgtagttatcaaatcactggactaaattcttttatttttgaaggaaggactagaaatgttaacaacctttgtttatatataagtaaatga |
128 |
Q |
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| T |
30830906 |
aaatgttagatgtagttatcaaatcactggactaaa-----ttttttttgaaggaaggactataaatgttaacaacctttgtt--tatataaataaatgt |
30830998 |
T |
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| Q |
129 |
ataaagttaatcaagaaacccaaaatcatatgtcatatatttaagatattgaagcttaaaggagggagaaaaaacctgaaagaatccccaatctttgcaa |
228 |
Q |
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| T |
30830999 |
ataaagttaatcaagaaacccaaaatcatatgtcatatatttaagatatttaagcttgaa-gagaga-aaaagacctgaaagaatccccaatctttgcaa |
30831096 |
T |
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| Q |
229 |
gcaaggtgaaact |
241 |
Q |
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| T |
30831097 |
gcaaggtgaaact |
30831109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 129 - 238
Target Start/End: Original strand, 30836422 - 30836532
Alignment:
| Q |
129 |
ataaagttaatcaagaaacccaaaatcat---atgtcatatatttaagatattgaagcttaaaggagggagaaaaaacctgaaagaatccccaatctttg |
225 |
Q |
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| T |
30836422 |
ataaagtcaattaagaaacccaaaatcatcagatgtcttatatttgagatattgaagcttgaag-agaga-aaaagacctgaaagaaaccccaatctttg |
30836519 |
T |
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| Q |
226 |
caagcaaggtgaa |
238 |
Q |
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| T |
30836520 |
caagcaaggtgaa |
30836532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 30854246 - 30854282
Alignment:
| Q |
202 |
acctgaaagaatccccaatctttgcaagcaaggtgaa |
238 |
Q |
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| T |
30854246 |
acctgaaagaatccccaatctttgcaagcaaggtgaa |
30854282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 30841733 - 30841769
Alignment:
| Q |
202 |
acctgaaagaatccccaatctttgcaagcaaggtgaa |
238 |
Q |
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| T |
30841733 |
acctggaagaatccccaatctttgcaagcaaggtgaa |
30841769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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