View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8461_low_11 (Length: 236)
Name: NF8461_low_11
Description: NF8461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8461_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 45051941 - 45052159
Alignment:
| Q |
1 |
tactccatgatagaagtcaaaggttactactaaatctttcatcgttctatgtggtgctttcttgtttctcttcagagaatggacatgtgctcctatttct |
100 |
Q |
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| T |
45051941 |
tactccatgatagaagtcaaaggttactactaaatctttcatcgctctatgtggtgctttcttgtttctcttcaaagaatggacatgtgctcctaatact |
45052040 |
T |
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| Q |
101 |
ttcacaacatgaagatgaacaaggttgtgcaaataacttaagtggaacctactgaaataacggagcatcgagcaccatgaaagaactatcatatatttag |
200 |
Q |
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| T |
45052041 |
ttcacaacatgaagatgaacaaggttgtgcaaataacttaagtggaacctactcaagtaacggagcatcgagcaccatgaaagaactatcatatttttag |
45052140 |
T |
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| Q |
201 |
atccatcttatctctatca |
219 |
Q |
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| T |
45052141 |
atccatcttatctctatca |
45052159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 46 - 181
Target Start/End: Complemental strand, 23930517 - 23930383
Alignment:
| Q |
46 |
tctatgtggtgctttcttgtttctcttcagagaatggacatgtgctcctatttctttcacaacatgaagatgaacaaggttgtgcaaataacttaagtgg |
145 |
Q |
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| T |
23930517 |
tctatgtggtgccatcttgtttctcttcaaagaatggataattgctctaatttcattcacaacatgaagatgaacaaggctatgcaagtagcttaagtgt |
23930418 |
T |
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| Q |
146 |
aacctactgaaataacggagcatcgagcaccatgaa |
181 |
Q |
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| T |
23930417 |
aaccttttgaagtaatggagc-tcgagcaccatgaa |
23930383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 26625453 - 26625509
Alignment:
| Q |
85 |
atgtgctcctatttctttcacaacatgaagatgaacaaggttgtgcaaataacttaa |
141 |
Q |
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| T |
26625453 |
atgtgctccaacttctttcacaatatgaagatgaataagtttgcgcaaatagcttaa |
26625509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 85 - 220
Target Start/End: Complemental strand, 9650614 - 9650480
Alignment:
| Q |
85 |
atgtgctcctatttctttcacaacatgaagatgaacaaggttgtgcaaataacttaagtggaacctactgaaataacggagcatcgagcaccatgaaaga |
184 |
Q |
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| T |
9650614 |
atgtgctccaatttctttcacaacatgaagacgtacaaggttgtgcaagtaacttaagtgcaaccttttgaagtaatggagc-tcgagcaccatgaacca |
9650516 |
T |
|
| Q |
185 |
actatcatatatttagatccatcttatctctatcat |
220 |
Q |
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| T |
9650515 |
atcaccatgtttttggatccatcttatctctatcat |
9650480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 85 - 220
Target Start/End: Complemental strand, 35964702 - 35964568
Alignment:
| Q |
85 |
atgtgctcctatttctttcacaacatgaagatgaacaaggttgtgcaaataacttaagtggaacctactgaaataacggagcatcgagcaccatgaaaga |
184 |
Q |
| |
|
||||||||| ||| |||||||||||||||||| |||||||||| |||| || |||||||| ||||| | || ||| ||| | |||||||||||||| | |
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| T |
35964702 |
atgtgctccaattgctttcacaacatgaagataaacaaggttgcgcaagtagcttaagtgcaaccttttcaactaatggaac-tcgagcaccatgaacca |
35964604 |
T |
|
| Q |
185 |
actatcatatatttagatccatcttatctctatcat |
220 |
Q |
| |
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|| | ||| | | ||||||||||||||||||||| |
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| T |
35964603 |
accaccatgcttatggatccatcttatctctatcat |
35964568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 128
Target Start/End: Original strand, 35964147 - 35964180
Alignment:
| Q |
95 |
atttctttcacaacatgaagatgaacaaggttgt |
128 |
Q |
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||||||||||||||||||||||| |||||||||| |
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| T |
35964147 |
atttctttcacaacatgaagatggacaaggttgt |
35964180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 40697544 - 40697590
Alignment:
| Q |
85 |
atgtgctcctatttctttcacaacatgaagatgaacaaggttgtgca |
131 |
Q |
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| T |
40697544 |
atgtgttccaatttctttcacaacatgaagatgaaaaaggttgtgca |
40697590 |
T |
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