View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8461_low_12 (Length: 211)
Name: NF8461_low_12
Description: NF8461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8461_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 25955769 - 25955963
Alignment:
| Q |
1 |
ttaggagaccaaaaagcatttgannnnnnn-atcttatcatttgctcttcccaaacactggtacaacataaccaaccaactccactgatcagtagtatgg |
99 |
Q |
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| T |
25955769 |
ttaggagaccaaaaagcatttgattttttttattttatcatttgctcttcccaa-cactggtacaacataaccaaccaactccactgatcagtagtaggg |
25955867 |
T |
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| Q |
100 |
tacattttgttgtttttcattttccaagttttgacatcttcatcatctaacaaaggttttaacctagtttttgagtataaatatccacaaaagagg |
195 |
Q |
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| T |
25955868 |
tacattttgttgtttttcattttccaagttttgacatcttcctcatctaacaaaggttttaacctagtttttgagtataaatatccacaaaagagg |
25955963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 39776723 - 39776677
Alignment:
| Q |
136 |
tcttcatcatctaacaaaggttttaacctagtttttgagtataaata |
182 |
Q |
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|||||||||| ||||| | ||||||||||||||||||||||||||| |
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| T |
39776723 |
tcttcatcattcaacaaggattttaacctagtttttgagtataaata |
39776677 |
T |
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