View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8461_low_3 (Length: 477)
Name: NF8461_low_3
Description: NF8461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8461_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 465
Target Start/End: Original strand, 28799849 - 28800294
Alignment:
| Q |
18 |
gattttataggttaaacagacaataaaaatagtttaagttaaagtaaccaatgt-ttgattggaagataaacaaatggctctttcttgtaaagaggtcaa |
116 |
Q |
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| T |
28799849 |
gattttataggtaaaacagacaataaaaatagtttaagttaaagtaaccaatgagttgattggtcgataaacaaatggctctttcttgtaaagaggtcaa |
28799948 |
T |
|
| Q |
117 |
aaaatttcaagattcctccacaaaggtgcattaaccttttgaaattgaaaaataaacttacttttagac--atatatatattatctataaatttcgttaa |
214 |
Q |
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| T |
28799949 |
aaaatttcaagattcctccacaaaggtgcattaaccttttgaaattgaaaaataaacttacttttagacatatatatatattatctataaatttcgttaa |
28800048 |
T |
|
| Q |
215 |
aagtaaactaacgcgaagacaaactcaacttctctactatctctgcagattgttacatgaatacaatgactaacctcaatctgcaaaagatagaagagaa |
314 |
Q |
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||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28800049 |
aagtaaactaacgcgaagacaaacttaacttctct--------ggcagattgttacatgaatacaatgactaacctcaatctgcaaaagatataagagaa |
28800140 |
T |
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| Q |
315 |
tcaaagctcgcactagaaacaatacattacatacacaatgtaaagaaaccttaaataacaatgttttcaccacccnnnnnnncctacacatttctcaatt |
414 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||| | |||||||||||||||||| |
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| T |
28800141 |
tcaaagctcgcactagaaacaatacattacatacaaaatgtaaagaaaccttaaataccaatgtttttaccactctttttttcctacacatttctcaatt |
28800240 |
T |
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| Q |
415 |
ac---nnnnnnnnnngatgtattatatatttagacatacaaaagtccaacacca |
465 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||| |
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| T |
28800241 |
acaaaaaaaaaaaatgatgtattatatatttagacatacaaaagtccaacacca |
28800294 |
T |
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