View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8461_low_4 (Length: 335)
Name: NF8461_low_4
Description: NF8461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8461_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 320
Target Start/End: Complemental strand, 38483354 - 38483053
Alignment:
| Q |
19 |
caggaagcgagacacttgacttaacatgcaagtaactgcaccagtaagtgtaattacgtagaagattcttccggaacgagcggattacagaggcatcgag |
118 |
Q |
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| T |
38483354 |
caggaagcgagacacttgacttaacatgcaagtaactgcaccaggaagtgtaattacgtagaagattcttccggaacgagcggattacagaggcatcgag |
38483255 |
T |
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| Q |
119 |
ggaatcgatgttgtctggaggaggattgagacgcatctgagcattggcgagatggaggaggacatgttcccgttggttgcggacattgtctgtctggaag |
218 |
Q |
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| T |
38483254 |
ggaatcgatgttgtctggaggaggattgagacgcatctgagcattggcgagatggaggaggacatgttctcgttggttgcggacattgtctgtctggaag |
38483155 |
T |
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| Q |
219 |
ccgaaaaagagggctagccaatttaggaggtcgtagtgtggttgccatttgggaggaaggtggaggtcaccgacggtgttgagggtggagaaggcagcgc |
318 |
Q |
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| T |
38483154 |
ccgaaaaagagggctagccaatctaggaggtcgtagtgtggttgccatttgggaggaaggtggaggtcaccgacggtgttgagggcggagaaggcagcgc |
38483055 |
T |
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| Q |
319 |
gg |
320 |
Q |
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| T |
38483054 |
gg |
38483053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 238
Target Start/End: Complemental strand, 30117655 - 30117522
Alignment:
| Q |
105 |
acagaggcatcgagggaatcgatgttgtctggaggaggattgagacgcatctgagcattggcgagatggaggaggacatgttcccgttggttgcggacat |
204 |
Q |
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| T |
30117655 |
acagcggcgtcgagagtatcgatgttatccggcggcggagtgagacgcatctgagcattggcgaggtgaagaacaagatgctcccgttgattacggacgt |
30117556 |
T |
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| Q |
205 |
tgtctgtctggaagccgaaaaagagggctagcca |
238 |
Q |
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| T |
30117555 |
tgtctttctgaaagccgaagaagagagcgagcca |
30117522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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