View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8462_high_1 (Length: 492)
Name: NF8462_high_1
Description: NF8462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8462_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Original strand, 10071757 - 10072231
Alignment:
| Q |
1 |
atatagatgttaagaatgaactctgccaaacttgtaaaagactccataagcatgtatttttctctacacagatgaacgagaccataagacaaataatgca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
10071757 |
atatagatgttaagaatgaactctgccaaacttgtaaaaggctccataagcatgtattttcctctacacagatgaacgagaccataagacaaataatgca |
10071856 |
T |
|
| Q |
101 |
caaatgacattgctttagttattaccttagctacattatgtgtgtgtagcaatcatcctctctttctttagctaaaaagaaaattaaaagaaacaggatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10071857 |
caaatgacattgctttagttattaccttagctacattatgtgtgggtagcaatcatcctctctttctttagctaaaaagaaaattaaaagaaacaggatg |
10071956 |
T |
|
| Q |
201 |
tgaacacaacttttcctatgagaatcaacaatgtgctagttcttgtctagcatggtactaaacaagatgttggttcttgtcaagttgcagaagcattgtt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10071957 |
tgaacacaacttttcctatgagaatcaacaatgtgctagttcttgtctagcatggtactaagcaagatgttggttcttgtcaagttgcagaagcattgtt |
10072056 |
T |
|
| Q |
301 |
gttggactctagaacggttggctcattgtaatagttcaaatgatgtaattcgtcaacccaaatccacgaaaaaattcttcatatagtgataaaaaatgct |
400 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
10072057 |
gttggactctagcacggttggctcattgtaatagttcaaatgatgtaattcgtcaacccaaatccac-aaaaaattcttcatatagtgacaaaaaatgct |
10072155 |
T |
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| Q |
401 |
attgatagcatttttctatcattgaatatagaatccatactttccatggatcaagtgctacgaatttcatcgtttt |
476 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10072156 |
attgatagcatttttctatcactgaatatagaatccatactttccatggatcaagtgctacgaatttcatcgtttt |
10072231 |
T |
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