View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8462_low_2 (Length: 445)
Name: NF8462_low_2
Description: NF8462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8462_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 19 - 431
Target Start/End: Original strand, 26491715 - 26492126
Alignment:
| Q |
19 |
aagttttttcgtaaccgttctttgtatcaactttgttagtgcagaaactaaggtctgatattttagcagcataatcttcagtgaggtatatagaagaaga |
118 |
Q |
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| T |
26491715 |
aagttttttcgtaacggttctttgtatcaactttgtcggtgcagaaactaaggtctgatattttagcagcataatcttcagttaggtatatagaagaaga |
26491814 |
T |
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| Q |
119 |
taacagatttctgtgggaaatgggtggtgtgagttgatgcatgtggtctagacagtaagctattcccatagctatcctctttctcattccccagtctagt |
218 |
Q |
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||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26491815 |
taacagatttctgtgggaaatgggtggtgtgagattatgcatgtggtctagacagtaagctattcccatagctatcctctttctcattccccagtctagc |
26491914 |
T |
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| Q |
219 |
tcttctgcttctctaactgcaatacatacatgaatggtgtcaactcaaaacaatatctaaaagcttagtaaaatttacataatcattttcaattagaatt |
318 |
Q |
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| T |
26491915 |
tcttctgcttctctaactgcaatatatacatgaatggtg-caacttaaaacaatatctaaaagcttagtaaaatttacataatcattttcaattagaatt |
26492013 |
T |
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| Q |
319 |
aaatatgtttttcttccctaaaaatatatcgctttttgattttggtccttgttattttattttagtccccgtnnnnnnnctcatgttgaaatttgtcatt |
418 |
Q |
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| T |
26492014 |
aaatatgtttttgttccctaaaaatatatcgctttttgattttggtccttgttattttattttagtccccgtaaaaaaattcatgttgaaatttgtcatt |
26492113 |
T |
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| Q |
419 |
gtaatacgtgtgt |
431 |
Q |
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| T |
26492114 |
gtaatacgtgtgt |
26492126 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 387
Target Start/End: Complemental strand, 33062733 - 33062686
Alignment:
| Q |
340 |
aaatatatcgctttttgattttggtccttgttattttattttagtccc |
387 |
Q |
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|||||||||| ||||||||||||||||||||| |||| |||||||||| |
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| T |
33062733 |
aaatatatcgatttttgattttggtccttgttgttttgttttagtccc |
33062686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 387
Target Start/End: Complemental strand, 14947783 - 14947737
Alignment:
| Q |
341 |
aatatatcgctttttgattttggtccttgttattttattttagtccc |
387 |
Q |
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|||||| | ||||||| ||||||||||||||||||| |||||||||| |
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| T |
14947783 |
aatataccactttttgtttttggtccttgttattttgttttagtccc |
14947737 |
T |
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