View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8462_low_5 (Length: 203)
Name: NF8462_low_5
Description: NF8462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8462_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 1087579 - 1087748
Alignment:
| Q |
19 |
attgttacttcaattgttgtaattacaacgtcggtgaacaattcaaatgaagtttattacatatatagtcttgtaaacaagagtaatgtttcaataactt |
118 |
Q |
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| T |
1087579 |
attgttacttcaattgttgtaattacaacgtcggtgaacaattcaaatgaagtttattacatatatagtcttgtaaacaagagtaatgtttcaataactt |
1087678 |
T |
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| Q |
119 |
atttgaaccaaacaactagtcatcgagaacgtgttaattggattccagaagacgatacttggagtattat |
188 |
Q |
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| T |
1087679 |
atttgaaccaaacaactagtcatcgcgaacgtgttaattggattccagaagacgatacttggagtgttat |
1087748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 1047105 - 1047217
Alignment:
| Q |
19 |
attgttacttcaattgttgtaattacaacgtcggtgaacaattcaaatgaagtttattacatatatagtcttgtaaacaagagtaatgtttcaataactt |
118 |
Q |
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| T |
1047105 |
attgttacatcaactgttgttgttgcaagatctgtgaacaattcaaatgaggtttattactcatatagtcttgtaaacaagagtaatgtttcaataactt |
1047204 |
T |
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| Q |
119 |
atttgaaccaaac |
131 |
Q |
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| T |
1047205 |
atttgaaccaaac |
1047217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 52 - 132
Target Start/End: Original strand, 1104165 - 1104245
Alignment:
| Q |
52 |
gtgaacaattcaaatgaagtttattacatatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaaca |
132 |
Q |
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| T |
1104165 |
gtgaacaatacaaatgaagtttactacacatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaaca |
1104245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 52 - 131
Target Start/End: Original strand, 1071951 - 1072030
Alignment:
| Q |
52 |
gtgaacaattcaaatgaagtttattacatatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaac |
131 |
Q |
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|||| |||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1071951 |
gtgatcaattcaaatgaagtttatttcacatatagtcttgtaaacaagagtatggtttcaataacttatttgaaccaaac |
1072030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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