View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8463_high_10 (Length: 395)
Name: NF8463_high_10
Description: NF8463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8463_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 29 - 381
Target Start/End: Complemental strand, 53582039 - 53581686
Alignment:
| Q |
29 |
tacttgagaacgagataactttaaggtactatttaggtatttactactactatattattgtatggtgaatatggctaagctatctttagactattatcgt |
128 |
Q |
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| T |
53582039 |
tacttgagaacgagataactttaaggtactatttaggtatttactactactatattattgtatggtgaatatggctaagctatctttagactattatcgt |
53581940 |
T |
|
| Q |
129 |
taaacgcgcaactatgcatattcggagaaaaaatagtattgcttgttcccaaaccactagtatggaaaacaaacatacaaatcattgttgtctcttcaac |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
53581939 |
taaacgcgcaactatgcatattcggagaaaaaatagtattgcttgttcccaaaccactagtatggaaaacaaacatacaaatcattgttgtatcttcaac |
53581840 |
T |
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| Q |
229 |
-aaaacaaatcaaatttgtatagattagttacaagaagttatttacattcccatatagcattgagaagttagtgaggtagaacaagatcccatatatgta |
327 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53581839 |
aaaaaaaaatcaaatttgtatagattagttacaagaagttatttacattcccatatagcattgagaagttagtgaggtagaacaagatcccatatatgta |
53581740 |
T |
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| Q |
328 |
cgttacttacctttccttaatttccactgacatttattcatgaaacacctaact |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53581739 |
cgttacttacctttccttaatttccactgacatttattcatgaaacacctaact |
53581686 |
T |
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