View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8463_high_16 (Length: 311)
Name: NF8463_high_16
Description: NF8463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8463_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 42039051 - 42039355
Alignment:
| Q |
1 |
ctgttacagcatgaatgagcttgcttctttgtgggaaaataaaatttctcaaaaaattcctagagcaatcatatctgaagacgatcttctaggaatagcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
42039051 |
ctgttacagcatgaatgagcttgcttctttgtgggaaaataaaattgctcgaaaaattcctagagcaatcgtctctgaagacgatcttctaggaatagcc |
42039150 |
T |
|
| Q |
101 |
gcaggttccagcctactcttaatannnnnnnatattctaaagtgacaaataatacgaatcaataaaatatttcataacaaattttgatacaatgtttgtt |
200 |
Q |
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|||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42039151 |
gcaggttccatcctactcttaatatttttttatattctaaagtgacaaataaaacgaatcaataaaatatttcataacaaattttgatacaatgtttgtt |
42039250 |
T |
|
| Q |
201 |
catttctctaagagtttggctaattggaagtgaatgagtattaa-------ttttgactatatgttaatgcagaaaattgtataccagaaagtgttgtgg |
293 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42039251 |
catttctctaagagtttggctaattggaagtgaacgagtattaattttgatttttgactatatgttaatgcagaaaattgtataccagaaagtgttgtgg |
42039350 |
T |
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| Q |
294 |
catca |
298 |
Q |
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||||| |
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| T |
42039351 |
catca |
42039355 |
T |
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