View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8463_high_18 (Length: 293)
Name: NF8463_high_18
Description: NF8463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8463_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 40404349 - 40404215
Alignment:
| Q |
1 |
aaggaaatgatgttgcctgtaaaaacaaacaagaaatatccatcaccacttgttaacaaatgactacttttattattgtttactatagcatttgtgttga |
100 |
Q |
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| T |
40404349 |
aaggaaatgatgttgcctgtaaaaacaaacaagaaatatccatcaccacttgttaacaaatgactacttttattattgtttactatagcatttgagttga |
40404250 |
T |
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| Q |
101 |
aaataaaaatatgacatatcgccatgcaatatata |
135 |
Q |
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| T |
40404249 |
aaataaaaatatgacatatcgccatgcaatatata |
40404215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 133 - 272
Target Start/End: Complemental strand, 40404164 - 40404025
Alignment:
| Q |
133 |
atatgttaatatgtttccaattaacatgctctataactaaataaatttttactcttagaagaatatttggacaacaaaagctaacgttaaattttaggta |
232 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
40404164 |
atatgttaatatgtttccaattaacatgctctataactaaataaatttttactctaagaagaatatttggacaacaaaagctaacgttaaatttgatgta |
40404065 |
T |
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| Q |
233 |
tatgatccaacaagcataacaaactagatgaagaaaaccg |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
40404064 |
tatgatccaacaagcataacaaactagatgaagaaaaccg |
40404025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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