View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8463_high_22 (Length: 219)
Name: NF8463_high_22
Description: NF8463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8463_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 37935361 - 37935565
Alignment:
| Q |
1 |
gagggatgagaactatttgtacttcatcatatcatattgtatggatcttgtaccac--ttatatttatcacatcttattcaataaaacatgttatttgct |
98 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
37935361 |
gagggatgagaactatttgtacttcatcatatcatattgtatggatcttgtaccacacttatatttatcacatcttattcaataaaacatgttatttgct |
37935460 |
T |
|
| Q |
99 |
attaaaaacaaa-cccctcatctcaaaattctac---ttactaagccccttacttatgtgcctcctattaggagaattcgttaagggacttatgtgcgga |
194 |
Q |
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|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37935461 |
attaaaaacaaaacccctcatctcaaaattctactacttactaagccccttacttatgtgcctcctattaggagaattcgttaagggacttatgtgcgga |
37935560 |
T |
|
| Q |
195 |
tgcat |
199 |
Q |
| |
|
||||| |
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|
| T |
37935561 |
tgcat |
37935565 |
T |
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