View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8463_high_4 (Length: 504)

Name: NF8463_high_4
Description: NF8463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8463_high_4
NF8463_high_4
[»] chr4 (11 HSPs)
chr4 (19-486)||(38220093-38220558)
chr4 (19-486)||(38242948-38243406)
chr4 (19-136)||(38237973-38238090)
chr4 (19-141)||(38226434-38226556)
chr4 (27-153)||(38214063-38214187)
chr4 (19-136)||(38253301-38253418)
chr4 (416-486)||(38248484-38248554)
chr4 (47-136)||(38248176-38248264)
chr4 (434-486)||(38238416-38238468)
chr4 (417-486)||(38214447-38214516)
chr4 (416-486)||(38226869-38226939)
[»] chr6 (4 HSPs)
chr6 (19-136)||(17454530-17454647)
chr6 (19-136)||(17433451-17433568)
chr6 (434-486)||(17455117-17455169)
chr6 (419-487)||(17434002-17434070)


Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 19 - 486
Target Start/End: Original strand, 38220093 - 38220558
Alignment:
Q  19 catagatcacatagccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttg 118  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38220093 catagatcacataaccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttg 38220192  T
Q  119 atactcaacctgaaacaattaaaatccatattgctttactatataatacccaacactggattagtgttacatttcagagttaaatcgagattgagacaaa 218  Q
    ||||||||||||||||||  ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  38220193 atactcaacctgaaacaaagaaa-tccatattgctttactatataatacccaacattggattagtgttacatttcagagttaaatcgagattgagacaaa 38220291  T
Q  219 caaactacaaatttggattccttgcaatctcgagactctacattcacgcaatcgacatagactgttggttcaagatcggacggtcctagatttcaagcta 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  38220292 caaactacaaatttggattccttgcaatctcgagactctacattcacgcaatcgacatagactgttggttcaagatcggacggtcctagatttcaatcta 38220391  T
Q  319 ggtattttggatgttaatnnnnnnnnnnnnnnntcaaaatttgtatattttgtgaaccgactgatcttgatctaacttttattgtgcatcgactgcgtgt 418  Q
    |||||||||||| |||||               |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  38220392 ggtattttggattttaat-aaaaaaaaaaaaaatcaaaatttgtatattttgtgaactgactgatcttgatctaacatttattgtgcatcgactgcgtgt 38220490  T
Q  419 ttcttgatgaatttgtttacctttcaatcatgttctgagttcattccttttgaattatctgatagttt 486  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  38220491 ttcttgatgaatttgtttaccttgcaatcatgttctgagttcattccttttgaattatctgatagttt 38220558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 19 - 486
Target Start/End: Original strand, 38242948 - 38243406
Alignment:
Q  19 catagatcacatagccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttg 118  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||| | ||| |||||| |||| |||| |||||||||||    
T  38242948 catagatcacatatccaccagtttgaaatgggagacttgtcctcttcacatgaacacacccattttcctccctatggtctgtgctgcaagattcaacttg 38243047  T
Q  119 atactcaacctgaaacaattaaaatccatattgctttactatataatacccaacactggattagtgttacatttcagagttaaatcgagattgagacaaa 218  Q
    |||||||| |||||||||  ||| ||||| |||||   |  ||| |||||||||| |||  ||||||||||||| |||||||||||||||||||||||||    
T  38243048 atactcaatctgaaacaaagaaa-tccatgttgct---cactatgatacccaacaatgggctagtgttacatttaagagttaaatcgagattgagacaaa 38243143  T
Q  219 caaactacaaatttggattccttgcaatctcgagactctacattcacgcaatcgacatagactgttggttc-aagatcggacggtcctagatttcaagct 317  Q
     ||| ||| ||||||||||||| |||  |  ||||||||||||||||||||||  || ||||||||||  | |||||| || ||||||||||||||||||    
T  38243144 taaattactaatttggattcctagcagccgagagactctacattcacgcaatcagcacagactgttggaccaaagatcagaaggtcctagatttcaagct 38243243  T
Q  318 aggtattttggatgttaatnnnnnnnnnnnnnnntcaaaatttgtatattttgtgaaccgactgatcttgatctaacttttattg-tgcatcgactgcgt 416  Q
     |||||||||||| |||||               |||| ||| ||||||||||||||| ||||| |||||||| ||| || |||| ||||| ||||| ||    
T  38243244 cggtattttggattttaat-------caaaataatcaatattcgtatattttgtgaactgactggtcttgatccaacattcattgatgcattgactgtgt 38243336  T
Q  417 gtttcttgatgaatttgtttacctttcaatcatgttctgagttcattccttttgaattatctgatagttt 486  Q
    |||||||||||||||  |||||||| |||||||| ||  ||||| |||||||||| ||||||||| ||||    
T  38243337 gtttcttgatgaattcatttaccttgcaatcatgatcaaagttcgttccttttgagttatctgattgttt 38243406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 38237973 - 38238090
Alignment:
Q  19 catagatcacatagccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttg 118  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||   |||||| |||||||||| |||| |||| |||||||||||    
T  38237973 catagatcatatagccaccagtttgaaatgggagacttgtcctcttcacatgaacacaggaatttccctccttatggtctgtgctgcaagattcaacttg 38238072  T
Q  119 atactcaacctgaaacaa 136  Q
    |||||||  |||||||||    
T  38238073 atactcattctgaaacaa 38238090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 38226434 - 38226556
Alignment:
Q  19 catagatcacatagccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttg 118  Q
    ||||||||||||||||||||||||| | |||||||||| |||||||||||| ||||||||||||||  || ||||||| ||||  ||| |||||||||||    
T  38226434 catagatcacatagccaccagtttgtagtgggagacttgtcctcttcacatcaacacaaccatttctttctttatggtctgtgccgcaagattcaacttg 38226533  T
Q  119 atactcaacctgaaacaattaaa 141  Q
    |||||||  ||||||||| ||||    
T  38226534 atactcagtctgaaacaaataaa 38226556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 27 - 153
Target Start/End: Original strand, 38214063 - 38214187
Alignment:
Q  27 acatagccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgatactcaa 126  Q
    ||||||||||||||||| | |||||||||| ||||| |||||||||||||||||||||     ||||| | |||||| || |||||||||||||||||||    
T  38214063 acatagccaccagtttgtagtgggagacttgtcctcatcacatgaacacaaccatttctcaaattatgatctgtggtacaagattcaacttgatactcaa 38214162  T
Q  127 cctgaaacaattaaaatccatattgct 153  Q
    ||||||||||  ||||||||| |||||    
T  38214163 cctgaaacaa--aaaatccatgttgct 38214187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 38253301 - 38253418
Alignment:
Q  19 catagatcacatagccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttg 118  Q
    ||||||||||||||||||| ||||| | |||||||||| |||| || ||||||||||| |||||||| ||||| || | | || |||| |||| |||||     
T  38253301 catagatcacatagccaccggtttgtagtgggagacttgtcctttttacatgaacacacccatttccctccttttgatctatgctgcaagatttaacttc 38253400  T
Q  119 atactcaacctgaaacaa 136  Q
    ||||||||||||||||||    
T  38253401 atactcaacctgaaacaa 38253418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 416 - 486
Target Start/End: Original strand, 38248484 - 38248554
Alignment:
Q  416 tgtttcttgatgaatttgtttacctttcaatcatgttctgagttcattccttttgaattatctgatagttt 486  Q
    |||||||||||||||   |||||||| |||||||| ||||| |||||||||||||||| ||||||||||||    
T  38248484 tgtttcttgatgaatgcatttaccttgcaatcatgatctgatttcattccttttgaatcatctgatagttt 38248554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 136
Target Start/End: Original strand, 38248176 - 38248264
Alignment:
Q  47 tgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgatactcaacctgaaacaa 136  Q
    |||||||||| |||| |||||||||||||| |||||||| ||||  || | |||| |||| |||||||| ||||||||||||||||||||    
T  38248176 tgggagacttgtccttttcacatgaacacacccatttccctcctattgatctgtgctgcaagattcaac-tgatactcaacctgaaacaa 38248264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 434 - 486
Target Start/End: Original strand, 38238416 - 38238468
Alignment:
Q  434 tttacctttcaatcatgttctgagttcattccttttgaattatctgatagttt 486  Q
    |||||||| || ||||| |||||||||||||||||||||||||||||||||||    
T  38238416 tttaccttgcagtcatgatctgagttcattccttttgaattatctgatagttt 38238468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 417 - 486
Target Start/End: Original strand, 38214447 - 38214516
Alignment:
Q  417 gtttcttgatgaatttgtttacctttcaatcatgttctgagttcattccttttgaattatctgatagttt 486  Q
    |||||||||||||||  |||||||| |||||||| || ||||||| ||||||||||| ||||||| ||||    
T  38214447 gtttcttgatgaattcatttaccttgcaatcatgatccgagttcaatccttttgaatcatctgatggttt 38214516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 486
Target Start/End: Original strand, 38226869 - 38226939
Alignment:
Q  416 tgtttcttgatgaatttgtttacctttcaatcatgttctgagttcattccttttgaattatctgatagttt 486  Q
    |||||||| |||||||  |||||||| |||||||| | |||||||| ||||||||||| ||||||| ||||    
T  38226869 tgtttcttaatgaattcatttaccttgcaatcatggtttgagttcaatccttttgaatcatctgatggttt 38226939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 17454530 - 17454647
Alignment:
Q  19 catagatcacatagccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttg 118  Q
    ||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||| |||| ||||| |||| |||| |||||||||||    
T  17454530 catagatcacatagccaccagtttgcagtgggagacttgtcctcttcacatgaacacaaccatttccctcctcatggtctgtgctgcaagattcaacttg 17454629  T
Q  119 atactcaacctgaaacaa 136  Q
    |||||||| |||||||||    
T  17454630 atactcaatctgaaacaa 17454647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 17433451 - 17433568
Alignment:
Q  19 catagatcacatagccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttg 118  Q
    ||||||||||||| ||||||||||| | |||||||||| |||||||||||||||||||||||||| | |||| ||||| | || |||| |||||||||||    
T  17433451 catagatcacatatccaccagtttgtagtgggagacttgtcctcttcacatgaacacaaccattttcctcctcatggtctctgctgcaagattcaacttg 17433550  T
Q  119 atactcaacctgaaacaa 136  Q
    |||||||| |||||||||    
T  17433551 atactcaatctgaaacaa 17433568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 434 - 486
Target Start/End: Original strand, 17455117 - 17455169
Alignment:
Q  434 tttacctttcaatcatgttctgagttcattccttttgaattatctgatagttt 486  Q
    |||||||| |||||||| |||||||||||||||||||||| ||||||||||||    
T  17455117 tttaccttacaatcatgatctgagttcattccttttgaatcatctgatagttt 17455169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 419 - 487
Target Start/End: Original strand, 17434002 - 17434070
Alignment:
Q  419 ttcttgatgaatttgtttacctttcaatcatgttctgagttcattccttttgaattatctgatagtttt 487  Q
    ||||||||||| |  |||||||| |||||||| ||||||||| |||||||||||| || ||||||||||    
T  17434002 ttcttgatgaaatcatttaccttacaatcatgatctgagttcgttccttttgaatcatttgatagtttt 17434070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University