View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8463_high_5 (Length: 503)
Name: NF8463_high_5
Description: NF8463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8463_high_5 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Original strand, 59716 - 60200
Alignment:
| Q |
1 |
aatagttatgcctcttggttgatgagaaaattgaacaactctaaactttactaccacaaataaaggtctgtttgtgtaaaagtataggtatatgccagct |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
59716 |
aatagttatgcctcttggttgatgagaaaattgaacaactctaaactttactaccacaaataaaggtctgtttgtgtaaaagtataggtatatgccagct |
59815 |
T |
|
| Q |
101 |
cacacaaagtacaagttgcctcatattgtcatctcaatctaaaagctccatggataagctagcttatggtacaagcgtgccaattaaacccaatcatacg |
200 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
59816 |
cacacaaagtacaagtttcctcatattgtcatctcaatctaaaagctccatggataagctagcttatggtacaagcgtgccaattaaacccaatcatacg |
59915 |
T |
|
| Q |
201 |
ataataatatcatgaaatgattaccggttgtacgaccactggcgtagagtgaaagaacggcctgaatggccacatacatagcaggggcattgaaagtctc |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
59916 |
ataataatatcatgaaatgattaccggttgtacgaccactggcgtagagtgaaagaacggcctgaatggccacatacatagcaggggcattgaaagtctc |
60015 |
T |
|
| Q |
301 |
aaacatgatttgggtcatcttctcacgattagcctttggattaagaggagcttctgttaagagaactggatgctcttcgggggcgacacgaagctcatta |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
60016 |
aaacatgatttgggtcatcttctcacgattagcctttggattaagaggagcttctgttaagagaactggatgctcttcgggggcgacacgaagctcatta |
60115 |
T |
|
| Q |
401 |
tagaaggtatgatgccaaatcttttccatgtcatcccaattgctaacaataccatgctcaattgggtacttgagagtgaggatac |
485 |
Q |
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| T |
60116 |
tagaaggtatgatgccaaatcttttccatgtcatcccaattgctaacaataccatgctcaattgggtacttgagagtgaggatac |
60200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 149; Significance: 2e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 221 - 477
Target Start/End: Complemental strand, 8689063 - 8688807
Alignment:
| Q |
221 |
ttaccggttgtacgaccactggcgtagagtgaaagaacggcctgaatggccacatacatagcaggggcattgaaagtctcaaacatgatttgggtcatct |
320 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||| || |||||||||||||||| ||| |||||||||||||||||||| ||||||| |
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| T |
8689063 |
ttaccggtggtacgaccactggcgtacagtgaaagaacggcctgaatagcaacatacatagcaggggtattaaaagtctcaaacatgatttgagtcatct |
8688964 |
T |
|
| Q |
321 |
tctcacgattagcctttggattaagaggagcttctgttaagagaactggatgctcttcgggggcgacacgaagctcattatagaaggtatgatgccaaat |
420 |
Q |
| |
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|||||||||| ||||| || || |||||||| || ||||| || ||||| || ||||| |||||||||||||||||||| |||||||| ||||||||||| |
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| T |
8688963 |
tctcacgattggccttagggttgagaggagcctcagttaaaagcactgggtgttcttctggggcgacacgaagctcattgtagaaggtgtgatgccaaat |
8688864 |
T |
|
| Q |
421 |
cttttccatgtcatcccaattgctaacaataccatgctcaattgggtacttgagagt |
477 |
Q |
| |
|
|||||||||||||||||| |||||||| || ||||| ||||| ||||| || ||||| |
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| T |
8688863 |
cttttccatgtcatcccagttgctaacgattccatgttcaatggggtatttaagagt |
8688807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 221 - 468
Target Start/End: Original strand, 37051120 - 37051367
Alignment:
| Q |
221 |
ttaccggttgtacgaccactggcgtagagtgaaagaacggcctgaatggccacatacatagcaggggcattgaaagtctcaaacatgatttgggtcatct |
320 |
Q |
| |
|
||||| |||||||||||||| || || || ||||| || || ||||| || |||||||||||||| | |||||| |||||||||||||| || ||||| | |
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| T |
37051120 |
ttaccagttgtacgaccactcgcataaagggaaagcacagcttgaatagcaacatacatagcaggagtattgaatgtctcaaacatgatctgagtcattt |
37051219 |
T |
|
| Q |
321 |
tctcacgattagcctttggattaagaggagcttctgttaagagaactggatgctcttcgggggcgacacgaagctcattatagaaggtatgatgccaaat |
420 |
Q |
| |
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|||||||||||||||| ||||||||||| ||||| || | || || || || ||||| || || |||||||| ||||| ||||| ||||||||||| || |
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| T |
37051220 |
tctcacgattagccttaggattaagaggtgcttcagtaagaaggacagggtgttcttcaggagcaacacgaagttcattgtagaaagtatgatgccagat |
37051319 |
T |
|
| Q |
421 |
cttttccatgtcatcccaattgctaacaataccatgctcaattgggta |
468 |
Q |
| |
|
||| ||||| ||||||||||| |||||||| ||||||||||||||||| |
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|
| T |
37051320 |
cttctccatatcatcccaattactaacaatcccatgctcaattgggta |
37051367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 221 - 477
Target Start/End: Complemental strand, 67409 - 67153
Alignment:
| Q |
221 |
ttaccggttgtacgaccactggcgtagagtgaaagaacggcctgaatggccacatacatagcaggggcattgaaagtctcaaacatgatttgggtcatct |
320 |
Q |
| |
|
|||||||||||||| ||||| || || || ||||| || ||||||||||| ||||||||||| || |||||||| ||||||||||| || || ||||| | |
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| T |
67409 |
ttaccggttgtacggccactagcataaagcgaaagcacagcctgaatggcaacatacatagctggagcattgaaggtctcaaacataatctgagtcattt |
67310 |
T |
|
| Q |
321 |
tctcacgattagcctttggattaagaggagcttctgttaagagaactggatgctcttcgggggcgacacgaagctcattatagaaggtatgatgccaaat |
420 |
Q |
| |
|
|||||||||||||||| |||||||| || ||||| || | ||||| ||||| ||||| || || |||||||||||||| ||||| || |||||||| || |
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| T |
67309 |
tctcacgattagccttaggattaagtggtgcttcagtgagaagaacaggatgttcttcaggagccacacgaagctcattgtagaaagtgtgatgccagat |
67210 |
T |
|
| Q |
421 |
cttttccatgtcatcccaattgctaacaataccatgctcaattgggtacttgagagt |
477 |
Q |
| |
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||||||||| |||||||| || |||||||| |||||||||||||||||||| ||||| |
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| T |
67209 |
cttttccatatcatcccagttactaacaattccatgctcaattgggtactttagagt |
67153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 5e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 223 - 465
Target Start/End: Complemental strand, 41387870 - 41387628
Alignment:
| Q |
223 |
accggttgtacgaccactggcgtagagtgaaagaacggcctgaatggccacatacatagcaggggcattgaaagtctcaaacatgatttgggtcatcttc |
322 |
Q |
| |
|
||||||||| ||||||||||| ||||| || |||||||||||||| || |||||||||||||| | ||||| ||||||||||| ||||| ||||| ||| |
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|
| T |
41387870 |
accggttgttcgaccactggcatagagcgatagaacggcctgaatagcaacatacatagcaggtgtgttgaatgtctcaaacataatttgtgtcattttc |
41387771 |
T |
|
| Q |
323 |
tcacgattagcctttggattaagaggagcttctgttaagagaactggatgctcttcgggggcgacacgaagctcattatagaaggtatgatgccaaatct |
422 |
Q |
| |
|
|||||||||||||||||||| || || ||||| || | | ||| || ||||| || ||||| ||||| || ||||| || ||||||||||||||||||| |
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|
| T |
41387770 |
tcacgattagcctttggattgagcggtgcttcagtgagcaaaaccgggtgctcctctggggccacacggagttcattgtaaaaggtatgatgccaaatct |
41387671 |
T |
|
| Q |
423 |
tttccatgtcatcccaattgctaacaataccatgctcaattgg |
465 |
Q |
| |
|
| |||||||||||||| || || ||||||||||| |||||||| |
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|
| T |
41387670 |
tctccatgtcatcccagttactcacaataccatgttcaattgg |
41387628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 272 - 485
Target Start/End: Original strand, 1263001 - 1263214
Alignment:
| Q |
272 |
acatacatagcaggggcattgaaagtctcaaacatgatttgggtcatcttctcacgattagcctttggattaagaggagcttctgttaagagaactggat |
371 |
Q |
| |
|
|||||||| ||||| ||||||||||||| ||||| || ||||||||||| || | ||| || || ||||| || ||||| || || | || || || | |
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|
| T |
1263001 |
acatacattgcaggcacattgaaagtctcgaacataatctgggtcatcttttctctattggctttaggattgagtggagcctcagtaagaagcacagggt |
1263100 |
T |
|
| Q |
372 |
gctcttcgggggcgacacgaagctcattatagaaggtatgatgccaaatcttttccatgtcatcccaattgctaacaataccatgctcaattgggtactt |
471 |
Q |
| |
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| |||||||| || ||||||||||||||||| || || |||||||||||||||||||| || ||||| || ||||| ||||||||||| || || ||||| |
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| T |
1263101 |
gttcttcgggagcaacacgaagctcattataaaatgtgtgatgccaaatcttttccatatcgtcccagttactaactataccatgctctataggatactt |
1263200 |
T |
|
| Q |
472 |
gagagtgaggatac |
485 |
Q |
| |
|
| |||||||||| |
|
|
| T |
1263201 |
caacgtgaggatac |
1263214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 227 - 477
Target Start/End: Original strand, 43647576 - 43647826
Alignment:
| Q |
227 |
gttgtacgaccactggcgtagagtgaaagaacggcctgaatggccacatacatagcaggggcattgaaagtctcaaacatgatttgggtcatcttctcac |
326 |
Q |
| |
|
|||||||||||||| || ||||| || || || ||||| |||||||||||||| ||||| ||||||| ||||| |||||||||||||||||||| || | |
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|
| T |
43647576 |
gttgtacgaccacttgcatagagggagaggacagcctggatggccacatacatggcaggcacattgaaggtctcgaacatgatttgggtcatcttttctc |
43647675 |
T |
|
| Q |
327 |
gattagcctttggattaagaggagcttctgttaagagaactggatgctcttcgggggcgacacgaagctcattatagaaggtatgatgccaaatcttttc |
426 |
Q |
| |
|
|| |||||||||||||| ||||| || |||| || ||||| ||||| ||||| || ||||| | ||||| || || || |||||||| ||||| || |
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| T |
43647676 |
tgttggcctttggattaagtggagcctcagttagaagtactgggtgctcctcgggagcaacacgcaattcattgtaaaatgtgtgatgccagatcttctc |
43647775 |
T |
|
| Q |
427 |
catgtcatcccaattgctaacaataccatgctcaattgggtacttgagagt |
477 |
Q |
| |
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|||||||||||| || || |||||||| |||||||| |||||||||||||| |
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|
| T |
43647776 |
catgtcatcccagttactgacaataccgtgctcaatggggtacttgagagt |
43647826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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