View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8463_high_6 (Length: 502)

Name: NF8463_high_6
Description: NF8463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8463_high_6
NF8463_high_6
[»] scaffold0004 (1 HSPs)
scaffold0004 (13-468)||(217768-218223)


Alignment Details
Target: scaffold0004 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 13 - 468
Target Start/End: Original strand, 217768 - 218223
Alignment:
Q  13 attattctatcactttttaatttctgaatctctttctcattatcttttccctctgaacttctaagctttttctcagccttcaatccttcattcaataaaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  217768 attattctatcactttttaatttctgaatctctttctcattatcttttccctctgaacttctaagctttttctcagccttcaatccttcattcaataaaa 217867  T
Q  113 tgaaatcagctataatgaagaaaacatatcccacagcctcaccaaaagctgatatgaaactcatcttctttgccaagtttgcatccacagttccaattct 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  217868 tgaaatcagctataatgaagaaaacatatcccacagcctcaccaaaagctgatatgaaactcatcttctttgccaagtttgcatccacagttccaattct 217967  T
Q  213 tgataaccaaagaaaatggtcaaagaagaaatagaccatttctcctgaattagaaagcactgctagtaaccttaaagtgagagtagaaccaggatttctt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  217968 tgataaccaaagaaaatggtcaaagaagaaatagaccatttctcctgaattagaaagcactgctagtaaccttaaagtgagagtagaaccaggatttctt 218067  T
Q  313 ctaagaccattgaatccagtgagaaaccttccagttctgaatgcttttctgctgagaccagaagctacttcccaatttttgaacctcttggatatatcag 412  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  218068 ctaagagcattgaatccagtgagaaaccttccagttctgaatgcttttctgctgagaccagaagctacttcccaatttttgaacctcttggatatatcag 218167  T
Q  413 ggtgagtgacttccacatgccagtttgcaagcttggaaacatattggaatgtcttc 468  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  218168 ggtgagtgacttccacacgccagtttgcaagcttggaaacatattggaatgtcttc 218223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University