View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8463_low_11 (Length: 450)
Name: NF8463_low_11
Description: NF8463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8463_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 16 - 432
Target Start/End: Complemental strand, 4314388 - 4313972
Alignment:
| Q |
16 |
ggacatcaatgactggaataatatactaaatagtaacatttgggaaaatgagagtaagatcattccagcactccgaattagttatcattatctccctccc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
4314388 |
ggacatcaatgactggaataatatactaaatagtaacatttgggaaaatgagagtaatatcattccagcactccgaattagttatcattatctctctccc |
4314289 |
T |
|
| Q |
116 |
tatttgaaacgctgctttgtttattgttccttgtatcctaaagattatacatttcgtaaagacaatttgatcttgttatggatggccgaaggtcttttaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4314288 |
tatttgaaacgctgctttgtttattgttccttgtatcctaaagattacacatttcgtaaagacaatttgatcttgttatggatggccgaagatcttttaa |
4314189 |
T |
|
| Q |
216 |
agtctcctaaaaatgggaagactttagaagaagttggtaatgaatattttaatgacttagtttcaaggtcattttttcaatgttcaggaagtgagaacaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4314188 |
agtctcctaaaaatgggaagactttagaagaagttggtaatgaatattttaatgacttagtttcaaggtcattttttcaatgttcaggaagtgagaacaa |
4314089 |
T |
|
| Q |
316 |
gagnnnnnnnatgcatgacctagtgcatgatttggccacattgcttggtggagaattctattacagagtagaagaactcagaaatgaaacaaatattggt |
415 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
4314088 |
gagttttgttatgcatgacctggtgcatgatttggccacattgcttggtggagaattctattacagagtagaagaactcggaaatgaaacaaatattggt |
4313989 |
T |
|
| Q |
416 |
accaagactcgacattt |
432 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
4313988 |
accaagactcgacattt |
4313972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 26 - 382
Target Start/End: Original strand, 4254108 - 4254464
Alignment:
| Q |
26 |
gactggaataatatactaaatagtaacatttgggaaaatgagagtaagatcattccagcactccgaattagttatcattatctccctccctatttgaaac |
125 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||| || |||||||||||||||| |||||||| |
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|
| T |
4254108 |
gactggaataatatactcaatagtaacatctgggaaaatgagagtaagatcattccagcactaaaaattagataccattatctccctccctgtttgaaac |
4254207 |
T |
|
| Q |
126 |
gctgctttgtttattgttccttgtatcctaaagattatacatttcgtaaagacaatttgatcttgttatggatggccgaaggtcttttaaagtctcctaa |
225 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| |||| || ||| ||||||||||||| ||||| || |||| |||||||| || | || |
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| T |
4254208 |
gttgctttgtttattgttccttgtatcctaaagattacgaatttgatagagatgatttgatcttgttgtggatagctgaagatcttttaagaccttcaaa |
4254307 |
T |
|
| Q |
226 |
aaatgggaagactttagaagaagttggtaatgaatattttaatgacttagtttcaaggtcattttttcaatgttcaggaagtgagaacaagagnnnnnnn |
325 |
Q |
| |
|
||||||||| |||||||||||||||||| ||| |||||||||||||||| ||| || |||||||||||| |||| || | ||||||| |||| |
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|
| T |
4254308 |
aaatgggaatactttagaagaagttggttatgggtattttaatgacttagcttctagatcattttttcaacgttccgggaatgagaaccagagttttgtg |
4254407 |
T |
|
| Q |
326 |
atgcatgacctagtgcatgatttggccacattgcttggtggagaattctattacaga |
382 |
Q |
| |
|
|||||||| || ||||||||||| || ||||| |||| |||||||||||||| |||| |
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|
| T |
4254408 |
atgcatgatctggtgcatgatttagcaacatttcttgatggagaattctatttcaga |
4254464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 17 - 300
Target Start/End: Original strand, 4246980 - 4247263
Alignment:
| Q |
17 |
gacatcaatgactggaataatatactaaatagtaacatttgggaaaatgagagtaagatcattccagcactccgaattagttatcattatctccctccct |
116 |
Q |
| |
|
||||||| ||| ||||||||| ||||| |||||||||||||||||| | |||||||||||||||||||| | ||||||||||||| |||| || || | |
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|
| T |
4246980 |
gacatcagtgattggaataatctactacatagtaacatttgggaaactcagagtaagatcattccagcattgagaattagttatcaacatctaccccctt |
4247079 |
T |
|
| Q |
117 |
atttgaaacgctgctttgtttattgttccttgtatcctaaagattatacatttcgtaaagacaatttgatcttgttatggatggccgaaggtcttttaaa |
216 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||| |||||| ||| || |||| | ||| | |||||||||| |||||||| |||| ||||||| | |
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|
| T |
4247080 |
atttgaaacgctgctttgtttactgttcattgtttcctaaggatcatgaattttacagagaggaactgatcttgttgtggatggcagaagatcttttaca |
4247179 |
T |
|
| Q |
217 |
gtctcctaaaaatgggaagactttagaagaagttggtaatgaatattttaatgacttagtttcaaggtcattttttcaatgttc |
300 |
Q |
| |
|
| |||| |||| ||| ||||||||||||| |||||||||||| |||||||||| |||||||| | |||||||||||| |||| |
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|
| T |
4247180 |
gcctccaaaaactggtaagactttagaagcagttggtaatgatcattttaatgatttagtttccatatcattttttcaacgttc |
4247263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 4305525 - 4305405
Alignment:
| Q |
17 |
gacatcaatgactggaataatatactaaatagtaacatttgggaaaatgagagtaagatcattccagcactccgaattagttatcattatctccctccct |
116 |
Q |
| |
|
|||||||| || || ||||||||||||| ||||||||||||||||| |||||||||||| ||||| ||||||| ||| ||||| |||||||||||||||| |
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|
| T |
4305525 |
gacatcaaggattgcaataatatactaactagtaacatttgggaaactgagagtaagattattcctgcactccaaatcagttaccattatctccctccct |
4305426 |
T |
|
| Q |
117 |
atttgaaacgctgctttgttt |
137 |
Q |
| |
|
|||||||| | |||||||||| |
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|
| T |
4305425 |
atttgaaatgttgctttgttt |
4305405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 21 - 432
Target Start/End: Original strand, 41933546 - 41933957
Alignment:
| Q |
21 |
tcaatgactggaataatatactaaatagtaacatttgggaaaatgagagtaagatcattccagcactccgaattagttatcattatctccctccctattt |
120 |
Q |
| |
|
|||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||| |
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|
| T |
41933546 |
tcaaggactgggatgatatactaaatagtaacatttgggaaaatgagagtaagatcattccagcactccgaatcagttatcattatctccttccttattt |
41933645 |
T |
|
| Q |
121 |
gaaacgctgctttgtttattgttccttgtatcctaaagattatacatttcgtaaagacaatttgatcttgttatggatggccgaaggtcttttaaagtct |
220 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| || || |
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|
| T |
41933646 |
gaaacgttgctttgtttattgttccttatatcctaaggattatgaatttcataaagacaatttgatcttgttatggatggccgaaggtcttttacagcct |
41933745 |
T |
|
| Q |
221 |
cctaaaaatgggaagactttagaagaagttggtaatgaatattttaatgacttagtttcaaggtcattttttcaatgttcaggaagtgagaacaagagnn |
320 |
Q |
| |
|
| || ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||| || |
|
|
| T |
41933746 |
aaaagaagtgggatgactttagaagaagttggtaatgaatattttaatgacttagcttcaaggtcattttttcaatgttctggaaatgagaacaaaagtt |
41933845 |
T |
|
| Q |
321 |
nnnnnatgcatgacctagtgcatgatttggccacattgcttggtggagaattctattacagagtagaagaactcagaaatgaaacaaatattggtaccaa |
420 |
Q |
| |
|
|||||||| |||||||| ||||| ||||| ||||| ||||| ||||||||||||||| ||||||||| ||||||||||||| ||| ||||||| |
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|
| T |
41933846 |
ttgtgatgcatgatctagtgcacgatttagccacgttgctcggtggggaattctattacagaacagaagaacttggaaatgaaacaaagattagtaccaa |
41933945 |
T |
|
| Q |
421 |
gactcgacattt |
432 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
41933946 |
gactcgtcattt |
41933957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 149; Significance: 2e-78; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 29 - 426
Target Start/End: Complemental strand, 34802451 - 34802054
Alignment:
| Q |
29 |
tggaataatatactaaatagtaacatttgggaaaatgagagtaagatcattccagcactccgaattagttatcattatctccctccctatttgaaacgct |
128 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| ||||| | | |
|
|
| T |
34802451 |
tggaataatatactaaataataacatttgggaaaatgagtgtaagatcattccggcactatgaattagttatcattatctccctccctgcttgaagggat |
34802352 |
T |
|
| Q |
129 |
gctttgtttattgttccttgtatcctaaagattatacatttcgtaaagacaatttgatcttgttatggatggccgaaggtcttttaaagtctcctaaaaa |
228 |
Q |
| |
|
|||||||||||| ||| |||||||||| |||||| ||| ||||||| |||||||||||||||||||||| |||| ||||||| || |||| ||| |
|
|
| T |
34802351 |
gctttgtttattattcactgtatcctaaggattatgaattcgataaagacgatttgatcttgttatggatggctgaagatcttttacagcctccggaaat |
34802252 |
T |
|
| Q |
229 |
tgggaagactttagaagaagttggtaatgaatattttaatgacttagtttcaaggtcattttttcaatgttcaggaagtgagaacaagagnnnnnnnatg |
328 |
Q |
| |
|
|||||||||||||||||||||| || ||| |||||||||||||||| |||||| ||||||||||| |||| || |||| ||| |||| ||| |
|
|
| T |
34802251 |
tgggaagactttagaagaagttagttatgggtattttaatgacttagcttcaagatcattttttcatcgttctgggagtgggaatgagagttttgtgatg |
34802152 |
T |
|
| Q |
329 |
catgacctagtgcatgatttggccacattgcttggtggagaattctattacagagtagaagaactcagaaatgaaacaaatattggtaccaagactcg |
426 |
Q |
| |
|
||||| |||||||||||||| || || ||| | |||||||| ||||||| ||| |||||||| | || |||||||| ||||||||||||||||| |
|
|
| T |
34802151 |
catgatctagtgcatgatttagcaacgttgataggtggagagttctattttagaacggaagaactagggaaagaaacaaagattggtaccaagactcg |
34802054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 59 - 295
Target Start/End: Complemental strand, 6059768 - 6059532
Alignment:
| Q |
59 |
gaaaatgagagtaagatcattccagcactccgaattagttatcattatctccctccctatttgaaacgctgctttgtttattgttccttgtatcctaaag |
158 |
Q |
| |
|
|||| ||| |||||| ||||||| ||| | ||||||||||||| ||||||||||| ||||||||||||| |||||||||||||| | ||||| |||| |
|
|
| T |
6059768 |
gaaagtgaaagtaaggtcattccggcattgagaattagttatcactatctccctccacatttgaaacgctgttttgtttattgttcgctatatcccaaag |
6059669 |
T |
|
| Q |
159 |
attatacatttcgtaaagacaatttgatcttgttatggatggccgaaggtcttttaaagtctcctaaaaatgggaagactttagaagaagttggtaatga |
258 |
Q |
| |
|
||||| |||| ||| | |||| |||||||| ||||||||||||| ||||||| | | || | ||| || | |||||| ||||| |||||| ||| |
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|
| T |
6059668 |
attatgaatttgagaaaaatgatttaatcttgttgtggatggccgaagatcttttattgccaccaataaaaggaatgacttttgaagaggttggttctga |
6059569 |
T |
|
| Q |
259 |
atattttaatgacttagtttcaaggtcattttttcaa |
295 |
Q |
| |
|
|||||| || | |||||||| || |||||||||||| |
|
|
| T |
6059568 |
gtattttgattatttagtttcgagatcattttttcaa |
6059532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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