View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8463_low_16 (Length: 349)
Name: NF8463_low_16
Description: NF8463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8463_low_16 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 11 - 349
Target Start/End: Original strand, 35025688 - 35026026
Alignment:
| Q |
11 |
taattctataataatattccttgtctttcttcaatagagattaggccaagctgcctaattagatgaaattatattttttaatgcatcttataataactta |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35025688 |
taattctataataatattccttgtctttcttcaatagagattaggccaacctgcctacttagatgaaattatattttttaatgcatcttataatcactta |
35025787 |
T |
|
| Q |
111 |
catagtgattttgccaagctcattattgatcaaaaaatacatacactacaaaattttcattgtacatcaattttttgttatatagagctagcagcaaaat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35025788 |
catagtgattttgccaagctcattattgatcaaaaaatacatacactacaaaattttcattgtacatcaattttttgttatatagagctagcagcaaaat |
35025887 |
T |
|
| Q |
211 |
ttatatacactagcctcggagaagagaggtattacatattcaaattatctcttaaatatatcaaatatctatatagctttttaccatttgagttatactt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35025888 |
ttatatacactagcctcggagaagagaggtattacatattcaaattatctcttaaatatatcaaatatctatatagctttttaccatttgagttatactt |
35025987 |
T |
|
| Q |
311 |
aaggaacattatacatcaatttttattttggtagaacaa |
349 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35025988 |
acggaacattatacatcaatttttattttggtagaacaa |
35026026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University