View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8463_low_18 (Length: 322)
Name: NF8463_low_18
Description: NF8463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8463_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 54 - 314
Target Start/End: Original strand, 42569818 - 42570075
Alignment:
| Q |
54 |
caaacagtctcaccaaatttatggcagtagataagctaaataagccaattccatgtgtttgcatatttttcttacatcaaaacataatgcagcaaaaatt |
153 |
Q |
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| T |
42569818 |
caaacagtctcactaaatttatggcagtagataagctaaataagccaattccatgtgtgtgcatatttttcatacaccaaaacacaatgcagcaacaatt |
42569917 |
T |
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| Q |
154 |
tgattaaataaacatcatataaggattaatacataaatatgaaagannnnnnnacagagttaataattaattaccttgacacgttcccaggtattagaaa |
253 |
Q |
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| T |
42569918 |
tgattaaataaacatcatataaggattaatacataaatatgaaaga---ttttacagagttaataattaattaccttgacacgttcccaggtattagaaa |
42570014 |
T |
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| Q |
254 |
cagtgatgggaccatgttccttaacaatatcaaagagagctcttgttattgtttgtctctg |
314 |
Q |
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| T |
42570015 |
cagtgatgggaccatgttccttaacaatatcaaagagagctcttgttattgtttgtctctg |
42570075 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 30443988 - 30444024
Alignment:
| Q |
54 |
caaacagtctcaccaaatttatggcagtagataagct |
90 |
Q |
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| T |
30443988 |
caaacagtctcaccaaatttatgccagtagataagct |
30444024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 2295191 - 2295242
Alignment:
| Q |
54 |
caaacagtctcaccaaatttatggcagtagataagct-aaataagccaattc |
104 |
Q |
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| T |
2295191 |
caaacagtctcacaaaacttatgccagtagataagctcaaataagccaattc |
2295242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 30251429 - 30251380
Alignment:
| Q |
54 |
caaacagtctcaccaaatttatggcagtagataagct-aaataagccaat |
102 |
Q |
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||||||||||||| ||| ||||| ||||||||||||| |||||||||||| |
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| T |
30251429 |
caaacagtctcacgaaacttatgtcagtagataagctcaaataagccaat |
30251380 |
T |
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