View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8463_low_2 (Length: 771)
Name: NF8463_low_2
Description: NF8463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8463_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 735; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 735; E-Value: 0
Query Start/End: Original strand, 1 - 751
Target Start/End: Original strand, 4093132 - 4093882
Alignment:
| Q |
1 |
ttatttgcgccaattatgcttcagcatcagaacctgcggaatctaccagtttaaacacagaatgattttgttgattgacatatgcagccaacatgatttc |
100 |
Q |
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| T |
4093132 |
ttatttgcgccaattatgcttcagcatcagaacctgcggaatctaccagtttaaacacagaatgattttgttgattgacatatgcagccaacatgatttc |
4093231 |
T |
|
| Q |
101 |
tgttgagctgactcatcattgagttagttatgacatagaaggattggctttcatctaacaaggcttagtggaaatagttatacatttgtatcacatttgc |
200 |
Q |
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| T |
4093232 |
tgttgagctgactcatcattgagttagttatgacatagaaggattggttttcatctaacaaggcttagtggaaatagttatacatttgtatcacatttgc |
4093331 |
T |
|
| Q |
201 |
accccttttgcattttacaaatactattctgtttatgtcacattttttcttagatgaaatcagtttatcattcgcttctgctttgctttgtttctacaag |
300 |
Q |
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| T |
4093332 |
accccttttgcattttacaaatactattctgtttatgtcatattttttcttagatgaaatcagtttatcattcgcttctgctttgctttgtttctacaag |
4093431 |
T |
|
| Q |
301 |
ttttcgtatccactataagtttgattgaggtttaagatggtgttgcagcatccttaagttcatatgcttctatttgaactctatgacgcgaaatagccac |
400 |
Q |
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| T |
4093432 |
ttttcgtatccactataagtttgattgaggtttaagatggtgttgcagcatccttaagttcttatgcttctatttgaactctatgacgcgaaatagccac |
4093531 |
T |
|
| Q |
401 |
atcaataattcaactggtttaggaacaactaaatgtaaggacgtctttcatcgattagatatgtgtaaggacaaataaaagtgacggcacttgtgtgtca |
500 |
Q |
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| T |
4093532 |
atcaataattcaactggtttaggaacaactaaatgtaaggacgtctttcttcgattagatatgtgtaaggacaaataaaagtgacggcacttgtgtgtca |
4093631 |
T |
|
| Q |
501 |
ttgtgaatttgtgacaatttttgttagttaattattattaatcaaaagtttataagaacttttttgtgagtgaagactttttgtgacaaatcttctactg |
600 |
Q |
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| T |
4093632 |
ttgtgaatttgtgacaatttttgttagttaattattattaatcaaaagtttataagaacttttttgtgagtgaagactttttgtgacaaatcttctactg |
4093731 |
T |
|
| Q |
601 |
tgtactgctcttgtgactagggaaaggttatggatgaagtaaaaacaatctggcattgccatgaataaatattctgtcttgataaattgaaattatatga |
700 |
Q |
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| T |
4093732 |
tgtactgctcttgtgactagggaaaggttatggatgaagtaaaaacaatctggcattgccatgaataaatattctgtcttgataaattgaaattatatga |
4093831 |
T |
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| Q |
701 |
tagatgctatcagtaataccaacttggtgcccagaatattcattcatgtca |
751 |
Q |
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| T |
4093832 |
tagatgctatcagtaataccaacttggtgcccagaatattcattcatgtca |
4093882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 696 - 751
Target Start/End: Complemental strand, 49541231 - 49541176
Alignment:
| Q |
696 |
tatgatagatgctatcagtaataccaacttggtgcccagaatattcattcatgtca |
751 |
Q |
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| T |
49541231 |
tatgatagatgccatcagtattactaactaggtgcccagaatattcattcatgtca |
49541176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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