View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8463_low_24 (Length: 228)
Name: NF8463_low_24
Description: NF8463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8463_low_24 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 11066057 - 11066267
Alignment:
| Q |
18 |
gcaactttgagtataagttatttagtttttctccaaatccatgattgggtgttttgaattggagtttatcggttcaagcatttatttttataacaaaatg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11066057 |
gcaactttgagtataagttatttagtttttctccaaatccatgattgggtgttttgaattggagtttatcggttcaagcatttatttttataagaaaatg |
11066156 |
T |
|
| Q |
118 |
ctgacatttaatttaattcatgtaatgaagagtgcctttgattttaagttgacaaaaatttaattttgcataaaagtgggtttaatgtacattaaattgc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
11066157 |
ctgacatttaatttaattcatgtaatgaagactgcatttgattttaagttgacaaaaatttaattttgggtaaaagtgggtttaatgtacaataaattgc |
11066256 |
T |
|
| Q |
218 |
ttttaaatgct |
228 |
Q |
| |
|
||||||||||| |
|
|
| T |
11066257 |
ttttaaatgct |
11066267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University