View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8463_low_26 (Length: 209)
Name: NF8463_low_26
Description: NF8463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8463_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 26722139 - 26721954
Alignment:
| Q |
1 |
tgagtgagaagaaaaaattaatttgagaaggaatgatgccttttggttttgtgattatgagaattggagttttgtttttgagtactgagagcattgatgg |
100 |
Q |
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| T |
26722139 |
tgagtgagaagaaaaaattaatttgagaaggaatgatgccttttggtttcgtgattatgagaattggagttttgtctttgagtagtgagagcattgatgg |
26722040 |
T |
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| Q |
101 |
aaattacacaacaaatagagtcttaaaccattttctcaaattacaacctcaaatcataatccaaggctcatggtttttcttctttg |
186 |
Q |
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| T |
26722039 |
aaattacacaacaaatagagtcttaaaccattttctcaaattacaacctcaaatcataatccaaggctcatggtttttcttctttg |
26721954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 1e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 45116783 - 45116955
Alignment:
| Q |
1 |
tgagtgagaagaaaaaattaatttgagaaggaatgatgccttttggttttgtgattatgagaattggagttttgtttttgagtactgagagcattgatgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
45116783 |
tgagtgagaagaaaaaattaatttgagaaggaatgatgccttttggtttcgtgattatgagaattggagttttgtctttgagtagtgagagcattgatgg |
45116882 |
T |
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| Q |
101 |
aaattacacaacaaatagagtcttaaaccattttctcaaattacaacctcaaatcataatccaaggctcatggtttttcttctttg |
186 |
Q |
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| T |
45116883 |
aaattacacaacaaatagagtcttaaaccatttt-------------ctcaaatcataatccaaggctcatggtttttcttctttg |
45116955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 9e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 2987595 - 2987423
Alignment:
| Q |
1 |
tgagtgagaagaaaaaattaatttgagaaggaatgatgccttttggttttgtgattatgagaattggagttttgtttttgagtactgagagcattgatgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||| ||||||||| |
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| T |
2987595 |
tgagtgagaagaaaaaattaatttgagaaggaatgatgccttttggtttcgtgattatgagaattggagttttgtctttgagtagtgagaacattgatgg |
2987496 |
T |
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| Q |
101 |
aaattacacaacaaatagagtcttaaaccattttctcaaattacaacctcaaatcataatccaaggctcatggtttttcttctttg |
186 |
Q |
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||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2987495 |
aaattacacaacaaatagagtattaaaccattttctc-------------aaatcataatccaaggctcatggtttttcttctttg |
2987423 |
T |
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