View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8463_low_3 (Length: 727)

Name: NF8463_low_3
Description: NF8463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8463_low_3
NF8463_low_3
[»] chr1 (6 HSPs)
chr1 (11-279)||(17080491-17080759)
chr1 (457-708)||(17080955-17081207)
chr1 (329-457)||(17080797-17080927)
chr1 (402-457)||(43609809-43609864)
chr1 (419-457)||(26307080-26307118)
chr1 (428-457)||(29230078-29230107)
[»] chr4 (8 HSPs)
chr4 (457-708)||(35212801-35213052)
chr4 (187-279)||(35212524-35212616)
chr4 (16-202)||(35212334-35212505)
chr4 (329-457)||(35212646-35212773)
chr4 (416-457)||(683065-683106)
chr4 (425-457)||(8457938-8457970)
chr4 (425-457)||(9988713-9988745)
chr4 (426-457)||(2976707-2976738)
[»] chr6 (3 HSPs)
chr6 (426-457)||(10335391-10335422)
chr6 (427-457)||(8148133-8148163)
chr6 (428-457)||(33076421-33076450)
[»] chr7 (2 HSPs)
chr7 (427-457)||(3119409-3119439)
chr7 (427-457)||(10893363-10893393)
[»] chr2 (3 HSPs)
chr2 (411-457)||(26787738-26787784)
chr2 (425-454)||(32843729-32843758)
chr2 (425-462)||(44046600-44046637)
[»] chr5 (1 HSPs)
chr5 (413-454)||(10009842-10009883)
[»] chr3 (2 HSPs)
chr3 (428-457)||(21110480-21110509)
chr3 (428-457)||(32166200-32166229)


Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 11 - 279
Target Start/End: Original strand, 17080491 - 17080759
Alignment:
Q  11 ataatactaataatcattgtttcctttgaatcttgaatccttcatagagtatgtagagatagagagggcactgttttataagagtttctaaatctctcaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17080491 ataatactaataatcattgtttcctttgaatcttgaatccttcatagagtatgtagagatagagagggcactgttttataagagtttctaaatctctcaa 17080590  T
Q  111 agatggttttggcagttggaaatttggcattatctcaaaatatgcatatacgttattttgttttcatcgtcattttcctttatttgtattctcttattaa 210  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  17080591 agatggttttggcaattggaaatttggcattatctcaaaatatgcatataagttattttgttttcatcctcattttcctttatttgtattctcttattaa 17080690  T
Q  211 agtataaggaactgcatagttgctgctgcttttagtttcagcatccttaacaatgctggttgtaaagtt 279  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  17080691 agtataaggaactgcatagttgctgctgcttttagtttcaacatccttaacaatgctggttgtaaagtt 17080759  T

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Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 457 - 708
Target Start/End: Original strand, 17080955 - 17081207
Alignment:
Q  457 tgttgtggctcgtgcccaatgttcgtgtcattactacataggttcatgtcacttgtataacttattatgctttatgtcatcattgttgtgttgcattgag 556  Q
    |||||||||| |||||||||||| |||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||| ||||||||||    
T  17080955 tgttgtggcttgtgcccaatgtttgtgtcagtactacataggttcatgtcacttgcataacttatcatgctttatgtcatcattgatgtattgcattgag 17081054  T
Q  557 gcagaatactctacaaaacatttaatttatgtattaagctactacatgtgcattgaaca-tttttgttggtgtgaggcgttgaagtcattttcacagtgc 655  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||| |||||||| ||||||    
T  17081055 gcagaatactctacaaaacatttaatttatgtattaagctgctacatgtgcattgaacattttttgttggtgtgaggtgttgaattcattttcgcagtgc 17081154  T
Q  656 aggtttttaaatcctatggttggacgctgcctatcatccttgggtcatggttg 708  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  17081155 aggtttttaaatcctatggttggacgctgcccatcatccttgcgtcatggttg 17081207  T

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Target: chr1; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 329 - 457
Target Start/End: Original strand, 17080797 - 17080927
Alignment:
Q  329 catcagaagaattgaatgctcaaaatatttccaaataacttcctactttggtagttcatattgcctagcaccgacattgatgcaac--aacgatacaagt 426  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||   ||||||||||||||||||||||  | ||||||||||    
T  17080797 catcagaagaattgaatgctcaaaatatttccaaataactttctacttcggtagttcatatattctagcaccgacattgatgcaacagagcgatacaagt 17080896  T
Q  427 gattacattcaattatgtcattttctcaaat 457  Q
    |||||||||||||||||| ||||||||||||    
T  17080897 gattacattcaattatgttattttctcaaat 17080927  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 402 - 457
Target Start/End: Original strand, 43609809 - 43609864
Alignment:
Q  402 acattgatgcaacaacgatacaagtgattacattcaattatgtcattttctcaaat 457  Q
    |||||||| |||||  || ||| |||||||||||||||||||| ||||||||||||    
T  43609809 acattgatacaacatggacacatgtgattacattcaattatgttattttctcaaat 43609864  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 419 - 457
Target Start/End: Original strand, 26307080 - 26307118
Alignment:
Q  419 atacaagtgattacattcaattatgtcattttctcaaat 457  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  26307080 atacatgtgatttcattcaattatgtcattttctcaaat 26307118  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 428 - 457
Target Start/End: Complemental strand, 29230107 - 29230078
Alignment:
Q  428 attacattcaattatgtcattttctcaaat 457  Q
    ||||||||||||||||||||||||||||||    
T  29230107 attacattcaattatgtcattttctcaaat 29230078  T

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Target: chr4 (Bit Score: 168; Significance: 1e-89; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 457 - 708
Target Start/End: Original strand, 35212801 - 35213052
Alignment:
Q  457 tgttgtggctcgtgcccaatgttcgtgtcattactacataggttcatgtcacttgtataacttattatgctttatgtcatcattgttgtgttgcattgag 556  Q
    |||||||||||||| |||||||| |||||| |||  ||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||| |    
T  35212801 tgttgtggctcgtgtccaatgtttgtgtcagtacgtcataggttcatgtcacttgtataacttatcatgctttatgtcataattgctgtgttgcattgtg 35212900  T
Q  557 gcagaatactctacaaaacatttaatttatgtattaagctactacatgtgcattgaacatttttgttggtgtgaggcgttgaagtcattttcacagtgca 656  Q
    ||||||||||||| ||||||||| |||||  ||||||||||||||||||||||||||||||||| ||||||||||  |||||| |||||||| |||||||    
T  35212901 gcagaatactctataaaacattttatttaattattaagctactacatgtgcattgaacatttttattggtgtgagatgttgaattcattttcgcagtgca 35213000  T
Q  657 ggtttttaaatcctatggttggacgctgcctatcatccttgggtcatggttg 708  Q
    |||||||||||||||||||||||||||||| ||||||||||  |||||||||    
T  35213001 ggtttttaaatcctatggttggacgctgcccatcatccttgcatcatggttg 35213052  T

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Target: chr4; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 187 - 279
Target Start/End: Original strand, 35212524 - 35212616
Alignment:
Q  187 cctttatttgtattctcttattaaagtataaggaactgcatagttgctgctgcttttagtttcagcatccttaacaatgctggttgtaaagtt 279  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  35212524 cctttatttgtattctcttattaaagtataaggaactgcatatttgctgctgattttagtttcagtatccttaacaatgctggttgtaaagtt 35212616  T

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Target: chr4; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 35212334 - 35212505
Alignment:
Q  16 actaataatcattgtttcctttgaatcttgaatccttcatagagtatgtagagatagagagggcactgttttataagagtttctaaatctctcaaagatg 115  Q
    |||||| |||||||||||| |||||||||| ||||||||||||| ||||||||| ||      ||||||||| |||||||||||||||||||||||||||    
T  35212334 actaatgatcattgtttccattgaatcttgtatccttcatagagaatgtagagagag------cactgttttgtaagagtttctaaatctctcaaagatg 35212427  T
Q  116 gttttggcagttggaaatttggcattatctcaaaatatgcatatacgttattttgttttcatcgtcattttcctttatttgtattct 202  Q
    |||||        || | ||||||||||||||||||||| ||||||| |||||| |||||||  ||| |||||||||||||||||||    
T  35212428 gtttt--------gacaattggcattatctcaaaatatggatatacgctatttt-ttttcattctcagtttcctttatttgtattct 35212505  T

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Target: chr4; HSP #4
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 329 - 457
Target Start/End: Original strand, 35212646 - 35212773
Alignment:
Q  329 catcagaagaattgaatgctcaaaatatttccaaataacttcctactttggtagttcatattgc-ctagcaccgacattgatgcaacaacgatacaagtg 427  Q
    |||||||||||||||| ||||||  |||||||| |||||||||| ||| ||| ||||||||| | ||||||||||||||| ||||||| |||||||||||    
T  35212646 catcagaagaattgaaggctcaa--tatttccagataacttcctccttcggtggttcatatttctctagcaccgacattggtgcaacagcgatacaagtg 35212743  T
Q  428 attacattcaattatgtcattttctcaaat 457  Q
    ||||||||||||||| | ||||||||||||    
T  35212744 attacattcaattatttaattttctcaaat 35212773  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 416 - 457
Target Start/End: Complemental strand, 683106 - 683065
Alignment:
Q  416 acgatacaagtgattacattcaattatgtcattttctcaaat 457  Q
    |||| ||| |||||||||||||||||||||||||||||||||    
T  683106 acgacacatgtgattacattcaattatgtcattttctcaaat 683065  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 425 - 457
Target Start/End: Complemental strand, 8457970 - 8457938
Alignment:
Q  425 gtgattacattcaattatgtcattttctcaaat 457  Q
    |||||||||||||||||||||||||||||||||    
T  8457970 gtgattacattcaattatgtcattttctcaaat 8457938  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 425 - 457
Target Start/End: Original strand, 9988713 - 9988745
Alignment:
Q  425 gtgattacattcaattatgtcattttctcaaat 457  Q
    |||||||||||||||||||||||||||||||||    
T  9988713 gtgattacattcaattatgtcattttctcaaat 9988745  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 426 - 457
Target Start/End: Complemental strand, 2976738 - 2976707
Alignment:
Q  426 tgattacattcaattatgtcattttctcaaat 457  Q
    ||||||||||||||||||||||||||||||||    
T  2976738 tgattacattcaattatgtcattttctcaaat 2976707  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 426 - 457
Target Start/End: Original strand, 10335391 - 10335422
Alignment:
Q  426 tgattacattcaattatgtcattttctcaaat 457  Q
    ||||||||||||||||||||||||||||||||    
T  10335391 tgattacattcaattatgtcattttctcaaat 10335422  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 427 - 457
Target Start/End: Complemental strand, 8148163 - 8148133
Alignment:
Q  427 gattacattcaattatgtcattttctcaaat 457  Q
    |||||||||||||||||||||||||||||||    
T  8148163 gattacattcaattatgtcattttctcaaat 8148133  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 428 - 457
Target Start/End: Complemental strand, 33076450 - 33076421
Alignment:
Q  428 attacattcaattatgtcattttctcaaat 457  Q
    ||||||||||||||||||||||||||||||    
T  33076450 attacattcaattatgtcattttctcaaat 33076421  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 427 - 457
Target Start/End: Complemental strand, 3119439 - 3119409
Alignment:
Q  427 gattacattcaattatgtcattttctcaaat 457  Q
    |||||||||||||||||||||||||||||||    
T  3119439 gattacattcaattatgtcattttctcaaat 3119409  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 427 - 457
Target Start/End: Original strand, 10893363 - 10893393
Alignment:
Q  427 gattacattcaattatgtcattttctcaaat 457  Q
    |||||||||||||||||||||||||||||||    
T  10893363 gattacattcaattatgtcattttctcaaat 10893393  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 411 - 457
Target Start/End: Original strand, 26787738 - 26787784
Alignment:
Q  411 caacaacgatacaagtgattacattcaattatgtcattttctcaaat 457  Q
    ||||||||| ||| ||||||||||||||| ||||||||||| |||||    
T  26787738 caacaacgacacatgtgattacattcaataatgtcattttcgcaaat 26787784  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 425 - 454
Target Start/End: Complemental strand, 32843758 - 32843729
Alignment:
Q  425 gtgattacattcaattatgtcattttctca 454  Q
    ||||||||||||||||||||||||||||||    
T  32843758 gtgattacattcaattatgtcattttctca 32843729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 425 - 462
Target Start/End: Complemental strand, 44046637 - 44046600
Alignment:
Q  425 gtgattacattcaattatgtcattttctcaaatgttgt 462  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  44046637 gtgattgcattcaattatgtcattttctcaaattttgt 44046600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 413 - 454
Target Start/End: Complemental strand, 10009883 - 10009842
Alignment:
Q  413 acaacgatacaagtgattacattcaattatgtcattttctca 454  Q
    ||||||| ||| ||||||||||| ||||||||||||||||||    
T  10009883 acaacgacacatgtgattacattgaattatgtcattttctca 10009842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 428 - 457
Target Start/End: Original strand, 21110480 - 21110509
Alignment:
Q  428 attacattcaattatgtcattttctcaaat 457  Q
    ||||||||||||||||||||||||||||||    
T  21110480 attacattcaattatgtcattttctcaaat 21110509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 428 - 457
Target Start/End: Original strand, 32166200 - 32166229
Alignment:
Q  428 attacattcaattatgtcattttctcaaat 457  Q
    ||||||||||||||||||||||||||||||    
T  32166200 attacattcaattatgtcattttctcaaat 32166229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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