View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8463_low_4 (Length: 547)
Name: NF8463_low_4
Description: NF8463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8463_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 484; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 12 - 532
Target Start/End: Original strand, 50227223 - 50227749
Alignment:
| Q |
12 |
agcagagagactgtatcaacttcttgtaatcatcagcagtagtgcagacaccaaaacctttcatctcagacaccaactccaaagcctcatcaaatcgttc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50227223 |
agcagagagactgtatcaacttcttgtaatcatcagcagtagtgcagacaccaaaacctttcatctcagacaccaactccaaagcctcatcaaatcgttc |
50227322 |
T |
|
| Q |
112 |
cagcttgcaatatcctcg------agtgtgatacattaacagggcataactttaaatgattctttttagcttcttctaagatcttcctagcctcttccat |
205 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50227323 |
cagcttgcaatatcctcggattagagtgtgatacattaacagggcataactttaaatgattctttttagcttcttctaagatcttcctagcctcttccat |
50227422 |
T |
|
| Q |
206 |
cttgctgacatctgaataagcaccagcaatagcagaatatgagtatacatctggtttcaaatccctactttcaagtaaactcaacatttccacagcttgt |
305 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
50227423 |
cttgccgacatctgaataagcactagcaatagcagaatatgagtatacatctggtttcaaatccctactttcaagtagactcaacatttccacagcttgt |
50227522 |
T |
|
| Q |
306 |
cccatttccccagatttggaataaccagtgataacaaaattgaaagcagcatttctaggaggtggaccattagcaatcattttgaaaacaaacttcttgg |
405 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50227523 |
cccatttccccagctttggaataaccagtgataacaaaattgaaagcagcatttctaggaggtggaccattagcaatcattttgaaaacaaacttcttgg |
50227622 |
T |
|
| Q |
406 |
ctgcatcaacatccttaaagctacacgacgcttgaacaaaatccgaaaacgtcttcattccatgtttcctcattgtcacacagggatatcattcaacacc |
505 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
50227623 |
ctgcatcaacatccttaaagctacacgacgcttgaacaaaatccgaaaacgtcttcattccacgtttcctcattgtcacacagggatatcattcaacacc |
50227722 |
T |
|
| Q |
506 |
tccaacgccagttctaaggtttcttct |
532 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
50227723 |
tccaacgccagttctaaggtttcttct |
50227749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 12 - 518
Target Start/End: Complemental strand, 36830410 - 36829901
Alignment:
| Q |
12 |
agcagagagactgtatcaacttcttgtaatcatcagcagtagtgcagacaccaaaacctttcatctcagacaccaactccaaagcctcatcaaatcgttc |
111 |
Q |
| |
|
||||||||||||| |||| ||||| ||| |||||||||| || | || |||||| | |||||||||| || ||||||||||||||||||||| ||||| |
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|
| T |
36830410 |
agcagagagactggatcagcttctcgtattcatcagcagaagcacgtaccccaaaatccttcatctcagtcaacaactccaaagcctcatcaaaccgttc |
36830311 |
T |
|
| Q |
112 |
cagcttgcaatatcctcg------agtgtgatacattaacagggcataactttaaatgattctttttagcttcttctaagatcttcctagcctcttccat |
205 |
Q |
| |
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|| ||||||||||| || |||||||||||| | |||||| |||||| ||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
36830310 |
caatttgcaatatccgcggattagagtgtgatacatga-cagggcttaacttcgaatgattctttttagcttcctccaagatcttcctagcctcttccat |
36830212 |
T |
|
| Q |
206 |
cttgctgacatctgaataagcaccagcaatagcagaatatgagtatacatctggtttcaaatccctactttcaagtaaactcaacatttccacagcttgt |
305 |
Q |
| |
|
|| || ||| |||||||||| ||||||| ||||||| ||||| ||||||||||||||| ||||||||||||||| |||||||| |||||||||||| |
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|
| T |
36830211 |
ctcgcctccattcgaataagcactagcaataacagaatacgagtacacatctggtttcaaacccctactttcaagtagcctcaacatctccacagcttgt |
36830112 |
T |
|
| Q |
306 |
cccatttccccagatttggaataaccagtgataacaaaattgaaagcagcatttctaggaggtggaccattagcaatcattttgaaaacaaacttcttgg |
405 |
Q |
| |
|
|||||||||||| |||||||||||| || |||||| |||||||| ||||||||| |||| | ||||||| |||||||||||| ||||| |||| |||| |
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|
| T |
36830111 |
cccatttccccaactttggaataaccggtaataacataattgaaaacagcatttccaggaagcggaccatcagcaatcattttcaaaaccaactctttgg |
36830012 |
T |
|
| Q |
406 |
ctgcatcaacatccttaaagctacacgacgcttgaacaaaatccgaaaacgtcttcattccatgtttcctcattgtcacacagggatatcattcaacacc |
505 |
Q |
| |
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| |||||| || |||| |||||| | ||| |||||| | ||||||||| ||| ||| || |||||||| | ||| |||||||||||||||||| | |
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| T |
36830011 |
cctgatcaacgtctttaatcctacacaaggctcgaacaacagccgaaaacggctttattgcacgtttcctc-ctctca-gcagggatatcattcaacagc |
36829914 |
T |
|
| Q |
506 |
tccaacgccagtt |
518 |
Q |
| |
|
|||| ||||||| |
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|
| T |
36829913 |
tccagagccagtt |
36829901 |
T |
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Back To:
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