View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8463_low_5 (Length: 539)
Name: NF8463_low_5
Description: NF8463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8463_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 10 - 521
Target Start/End: Original strand, 21267950 - 21268460
Alignment:
| Q |
10 |
attatactcataaattttatacgatcagaagcatcaatcaaatatatttataaaacaattctcaaaagacagcatcgaagtccaatctaattgaagtttg |
109 |
Q |
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|||||||||||||||||| |||||||||||||| |||||||||| ||| | ||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
21267950 |
attatactcataaattttgtacgatcagaagcaacaatcaaatacattcacaaaacaattatcaaaagacagcatcgaggtccaatctaattgaagtttg |
21268049 |
T |
|
| Q |
110 |
acaatagattagatgaaaacacaaatcacatgtagtttttacctagcaacaaagaggcaacaagaagtttcatacacttttggtcaaatcaatataataa |
209 |
Q |
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|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
21268050 |
acaatagattagatgaaaacacaaatcagatgtagcttttacctagcaacaaagaggcaacaag---tttcatacacttttggtcaaatcaatagaataa |
21268146 |
T |
|
| Q |
210 |
aaccataaacccaacaaattaagttgttaattaactaactaattaatgacttaattaaaatactcaacaaaa-ggtacttttgaa-ccatgagaaagtgg |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||| |
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| T |
21268147 |
aaccataaacccaacaaattaagttgttaattaactaactaattaatgacttaattaaaatactcaagaaaaaggtacttttgaagccatgagaaagtgg |
21268246 |
T |
|
| Q |
308 |
gtccaataattcctttctttctttccacacaacacaacaaatacgcgcagcaagcatgatcgtttcttcttcccactacttatacccttaaaagcgttac |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21268247 |
gtccaataattcctttctttctttccacacaacacaacaaatacgcgcagcaagcatgatcgtttcttcttcccactacttatacccttaaaagcgttac |
21268346 |
T |
|
| Q |
408 |
ttccacaactaattattattcattcctaaaacagttacaaaacacaaacacattccaattccgaatcacacttttcttcttcttcttccaaaacctttca |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21268347 |
ttccacaactaattattattcattcctaaaacagttacaaaacacaaacacattccaattccgaatcacacttttcttcttcttcttccaaaacctttca |
21268446 |
T |
|
| Q |
508 |
acaatggcggtaat |
521 |
Q |
| |
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|||||||||||||| |
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| T |
21268447 |
acaatggcggtaat |
21268460 |
T |
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