View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8463_low_9 (Length: 473)
Name: NF8463_low_9
Description: NF8463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8463_low_9 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Complemental strand, 40905757 - 40905282
Alignment:
| Q |
1 |
ataccacaacaacaaaatcaaaatctctattatcttttattaaacaatcccaacagcataattctttacatgcaaacttcacaaattctcagaaactcaa |
100 |
Q |
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|||||| ||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
40905757 |
ataccaaaacaacaaaatcaaaatctagcttatcttttattagacaatcccagtagcataattctttacatgcaaatttcacaaattctcacaaactcaa |
40905658 |
T |
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| Q |
101 |
taatcccaacgggattatttatgaaatttatttatataaacaa----ctagaaagataactcagtccacactagtatcgaatatttcaacagtgtttta- |
195 |
Q |
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| T |
40905657 |
taatccaaaagggattatttatgaaaattatttatataaataaaaaactagaaagataactcagtccacactagtatggcatatttcaacagtgttctag |
40905558 |
T |
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| Q |
196 |
--ttttactcctccattcgtatgatacatctgatggactcccctttcagcatgtaatcaaaagctttgttaatctctgaaaatggaattgtgtgagtaat |
293 |
Q |
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| T |
40905557 |
agttttactcccccattcgtatgatacatctgatggactcccctttcagcatgtaatcaaaagctttgttaatctctgaaaatggaattgtgtgagtaat |
40905458 |
T |
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| Q |
294 |
gaatttctccagttccagttcctgtaatatcatagtaatatcatattagcaacacaaataacatatcattctgcaatattaattaatcttccgtaacagt |
393 |
Q |
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| T |
40905457 |
gaatttctctagttccagttcctgtaatatcatagtaatatcatattagcaacacaaataacatatcattctgcaatattaattaatcttccgtaacagt |
40905358 |
T |
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| Q |
394 |
gcacgattcgatgtacatatataaacttacccctttcatgtacttttctacaacattaggaagatcagtgcggggtttgt |
473 |
Q |
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| T |
40905357 |
gcacgattcgatg----tatataaacgtacccctttcatgtacttttctacaacattaggaagatcagtgcggggtttgt |
40905282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 12 - 317
Target Start/End: Complemental strand, 40901188 - 40900884
Alignment:
| Q |
12 |
acaaaatcaaaatctctattatcttttattaaacaatcccaacagcataattctttacatgcaaacttcacaaattctcagaaactcaataatcccaacg |
111 |
Q |
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||||||||||||||| ||||||| ||||| | ||||||||||||| ||||||||||||| |||||||||||||||||| ||||| ||||||| || | |
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| T |
40901188 |
acaaaatcaaaatctagcttatcttgtattagagaatcccaacagcacaattctttacatgtaaacttcacaaattctcacaaacttcataatccaaaag |
40901089 |
T |
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| Q |
112 |
ggattatttatgaaatttatttatataaacaactagaaagataactcagtccacactagtatcgaatatttcaacagtgtttta---ttttactcctcca |
208 |
Q |
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| T |
40901088 |
a-attatttatgaaattttttt-tctcaacaaccaaggagagaaatgagtccct--tagtagggattattacatcattgttttagagttttactcctcca |
40900993 |
T |
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| Q |
209 |
ttcgtatgatacatctgatggactcccctttcagcatgtaatcaaaagctttgttaatctctgaaaatggaattgtgtgagtaatgaatttctccagttc |
308 |
Q |
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|||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||| ||||| |
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| T |
40900992 |
ttcggatgatgcatctgatggactctcctttcagcatgtaatcaaaagctttgttaatctctgaaaatgggattgagtgagtgatgaatttctcaagttc |
40900893 |
T |
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| Q |
309 |
cagttcctg |
317 |
Q |
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||| ||||| |
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| T |
40900892 |
cagctcctg |
40900884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 196 - 317
Target Start/End: Complemental strand, 40882305 - 40882184
Alignment:
| Q |
196 |
ttttactcctccattcgtatgatacatctgatggactcccctttcagcatgtaatcaaaagctttgttaatctctgaaaatggaattgtgtgagtaatga |
295 |
Q |
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| T |
40882305 |
ttttactcctccattcggatgatacatctgatggactctcctttcaacatgtaatcaaaagctttgttaatctctgaaaatggaattgtgtgagtgatga |
40882206 |
T |
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| Q |
296 |
atttctccagttccagttcctg |
317 |
Q |
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| T |
40882205 |
atttctcaagttccagctcctg |
40882184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 414 - 473
Target Start/End: Complemental strand, 40882085 - 40882026
Alignment:
| Q |
414 |
ataaacttacccctttcatgtacttttctacaacattaggaagatcagtgcggggtttgt |
473 |
Q |
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| T |
40882085 |
ataaacttacccctttcatgtacttttctacaacattaggaagatcggtgcggggtttgt |
40882026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 410 - 465
Target Start/End: Complemental strand, 40900791 - 40900736
Alignment:
| Q |
410 |
atatataaacttacccctttcatgtacttttctacaacattaggaagatcagtgcg |
465 |
Q |
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| T |
40900791 |
atataaaaacttacccctttcatgtacttctctacaacattaggaagatcggtgcg |
40900736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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