View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8464_low_1 (Length: 509)
Name: NF8464_low_1
Description: NF8464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8464_low_1 |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 20 - 489
Target Start/End: Original strand, 32958348 - 32958817
Alignment:
| Q |
20 |
catcaacggtgagaattgacaagagattgttgcggaacttgttaatgaagtatatgttttcaaataaaattaagaaccatgatttgaaaacgaattcaaa |
119 |
Q |
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| T |
32958348 |
catcaacggtaagaattgacaagagattgttgcagaacatgttaatgaagtatatgttttcgaataaaattaagaaccatgatttgcaaacgaattcaaa |
32958447 |
T |
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| Q |
120 |
acgcatgaaagatttaagatgaagatcagagaaggcaatatcatcatatttatatagttgttgttcgccttttcttttgagagaatgaagttcagcggtt |
219 |
Q |
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| T |
32958448 |
acgcatgaaagatttaagatgaagatcagagaaggcaatatcatcatatatatatagttgttgttcgccttttcttttgagagaatgaagttcagcggtt |
32958547 |
T |
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| Q |
220 |
gcagattggaatacgagtgaatgagattgttgaatacggatggtacgagtaaggatggtggtcgagatggttgtggtggtttgtttagagtaaataacgg |
319 |
Q |
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| T |
32958548 |
gcagattggaatacgagtgaatgagattgttgaatacggatggtacgagtaaggatggtggtcgagatgtttgtggtggtttgtttagagtaaataacgg |
32958647 |
T |
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| Q |
320 |
taagtgcaggaaagcacataaaaactgtcatgaccgaattccaatgcatcattagcaccaacagaaaataaatctctaagcctatgtacacaccaactcg |
419 |
Q |
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| T |
32958648 |
taagtgcaagaaagcacataaaaactgtcatgaccgaattccaatacatcattagcaccaaaagaaaataaatctctaagcctatgtacacaccagctcg |
32958747 |
T |
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| Q |
420 |
cagaaaccataagccaaactagcagtcagaacagcctgaaactaacactctaaaaccatgacaggaaacc |
489 |
Q |
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| T |
32958748 |
cagaaaccataagccaaactagcagtcacaacagcctgaaactaacactctaaaaccatgacaggaaacc |
32958817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 407 - 483
Target Start/End: Complemental strand, 29143007 - 29142931
Alignment:
| Q |
407 |
acacaccaactcgcagaaaccataagccaaactagcagtcagaacagcctgaaactaacactctaaaaccatgacag |
483 |
Q |
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| T |
29143007 |
acacaccagctcgcagaaaccagaagccaaactagcagtcagaacagtccgaaattaccactgcaaaaccatgacag |
29142931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 97 - 256
Target Start/End: Complemental strand, 38630 - 38473
Alignment:
| Q |
97 |
catgatttgaaaacgaattcaaaacgcatgaaagatttaagatgaagatcagagaaggcaatatcatcatatttatatagttgttgttcgccttttcttt |
196 |
Q |
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||||||||| ||| | ||||||||||| |||||||||||||||| |||| ||||||||||||||||||| | |||| | |||||||| |||||| || |
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| T |
38630 |
catgatttgcaaatggattcaaaacgcttgaaagatttaagatgcagattggagaaggcaatatcatcatgtctata--gctgttgttcacctttttgtt |
38533 |
T |
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| Q |
197 |
tgagagaatgaagttcagcggttgcagattggaatacgagtgaatgagattgttgaatac |
256 |
Q |
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| T |
38532 |
tgagagaatgaagttcagcggttgcagattggaatacgagtgaatgagattgttgaatac |
38473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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