View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8465_high_1 (Length: 454)
Name: NF8465_high_1
Description: NF8465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8465_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 29561528 - 29561967
Alignment:
| Q |
1 |
atttcgtccccttaactacattttgttcattctggaacttttcaaaatcaacacagagcatggaaagtttttcttcaatctcatttttcttactttctga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29561528 |
atttcgtccccttaactacattttgttcattctggaacttttcaaaatcaacacagagcatggaaagttttgcttcaatctcatttttcttactttctga |
29561627 |
T |
|
| Q |
101 |
tgaaagagccctttgtttccactcttgcacctgtgtgaaagaaaatacaaaagttaatgcaaacaggaagcgccagaaataaacgactagaagtaaacac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29561628 |
tgaaagagccctttgtttccactcttgcacctgtgtgaaagaaaatacaaa-gttaatgcaaacaggaagcgccagaaataaacgactagaagtaaacac |
29561726 |
T |
|
| Q |
201 |
ggtcctaagaggttgttgaatgtaagaataaactttatcttacatcattgtgtagagattggatttgagaatcagaatgcaaggcgcgatctttccagaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29561727 |
ggtcctaagaggttgttgaatgtaagaataaactttatcttacatcattgtgtagagattggatttgagaatcagaatgcaaggcgcgatctttccagaa |
29561826 |
T |
|
| Q |
301 |
atctcgtgaagcctgcagttcttccatctcttccctcacctggcctagcatctcctgcatttgggaccattgttctgtctcaactctaacttgctccact |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29561827 |
atctcgtgaagcctgcagttcttccatctcttccctcacctggcctagcatctcctgcatttgggaccattgttctgtctcaactctaacttgctccact |
29561926 |
T |
|
| Q |
401 |
attcttcttacaatagtcttgcaatgtcctgaacacaggtt |
441 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
29561927 |
attcttcttacaatagtcttgcaatgtcctgaacacaggtt |
29561967 |
T |
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